Plasmid NZ_CP043510.1

Sequence

Nucleotide Information

Accession NZ_CP043510.1
Description Salmonella enterica subsp. enterica serovar Rissen strain GJ0703-2 plasmid unnamed, complete sequence
Source refseq
Topology circular
Length 4657 bp
GC Content 0.52 %
Created at NCBI March 4, 2020



Assembly

Genome Data Information

Accession GCF_011057955.1
Assembly Coverage 257


Biosample

Curated Collection Information
Accession 12657726

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query 30.40N;120.52E
Original Query Type coordinates
Coordinates (Lat/Lon) 30.40/120.52
Address 苏台高速, Yipeng, Haining, Jiaxing, Zhejiang, China

ECOSYSTEM
Original Query stool
Classification fecal,gastrointestinal_system,host_associated
Host-associated Taxon

DISEASE
Original Query None
DOID/SYMP

Visualization

PNG JSON



Similar Plasmids

based on Mash distance

NZ_CP063336.1 See Comparison
NZ_CP103775.1 See Comparison
NZ_CP102759.1 See Comparison
CP082458.1 See Comparison
NZ_CP092914.1 See Comparison
NZ_CP063336.1 See Comparison
NZ_CP133400.1 See Comparison
NZ_CP133424.1 See Comparison
NZ_CP133288.1 See Comparison
NZ_OR126578.1 See Comparison
NZ_CP102759.1 See Comparison
NZ_CP103775.1 See Comparison
CP082458.1 See Comparison
NZ_CP092914.1 See Comparison
NZ_CP133400.1 See Comparison
NZ_CP133424.1 See Comparison
NZ_CP133288.1 See Comparison
NZ_OR126578.1 See Comparison
NZ_CP063336.1 See Comparison
NZ_CP103775.1 See Comparison
NZ_CP092914.1 See Comparison
NZ_CP102759.1 See Comparison
CP082458.1 See Comparison
NZ_CP133400.1 See Comparison
NZ_CP133424.1 See Comparison
NZ_CP133288.1 See Comparison
NZ_CP043510.1 See Comparison
NZ_CP063336.1 See Comparison
NZ_CP102759.1 See Comparison
NZ_OR126578.1 See Comparison
NZ_CP103775.1 See Comparison
NZ_CP092914.1 See Comparison
CP082458.1 See Comparison
NZ_CP133400.1 See Comparison
NZ_CP133424.1 See Comparison
NZ_CP133288.1 See Comparison
NZ_OR126578.1 See Comparison
NZ_CP103775.1 See Comparison
NZ_CP063336.1 See Comparison
NZ_CP102759.1 See Comparison
NZ_OR126578.1 See Comparison
NZ_CP133400.1 See Comparison
NZ_CP133424.1 See Comparison
NZ_CP133288.1 See Comparison
NZ_CP092914.1 See Comparison
CP082458.1 See Comparison
NZ_CP063336.1 See Comparison
NZ_CP103775.1 See Comparison
NZ_CP102759.1 See Comparison
CP082458.1 See Comparison
NZ_CP092914.1 See Comparison
NZ_OR126578.1 See Comparison
NZ_CP133400.1 See Comparison
NZ_CP133424.1 See Comparison
NZ_CP133288.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore