Plasmid NZ_CP127154.1

Sequence

Nucleotide Information

Accession NZ_CP127154.1
Description Klebsiella pneumoniae subsp. pneumoniae strain T1 plasmid pT1_p1, complete sequence
Source refseq
Topology circular
Length 221844 bp
GC Content 0.50 %
Created at NCBI June 16, 2023



Assembly

Genome Data Information

Accession GCF_030263875.1
Assembly Coverage 30


Biosample

Curated Collection Information
Accession 35562370

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query 31.11N;121.29E
Original Query Type coordinates
Coordinates (Lat/Lon) 31.11/121.29
Address Zhangshi, Sijing, Songjiang District, Shanghai, 201619, China

ECOSYSTEM
Original Query Homo sapiens,Shanghai East Hospital
Classification anthropogenic,hospital,host_associated,location
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query epilepsy, coma, and pulmonary infection
DOID/SYMP
  • Epilepsy (DOID:1826 )
    • A brain disease that is characterized by the occurrance of at least two unprovoked seizures resulting from a persistent epileptogenic abnormality of the brain that is able to spontaneously generate paroxysmal activity and typically manifested by sudden brief episodes of altered or diminished consciousness, involuntary movements, or convulsions.

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

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NZ_CP125350.1 See Comparison
NZ_CP152449.1 See Comparison
NZ_CP154274.1 See Comparison
NZ_CP152444.1 See Comparison
NZ_CP141780.1 See Comparison
NZ_CP154394.1 See Comparison
NZ_CP154419.1 See Comparison
NZ_CP154304.1 See Comparison
NZ_CP034416.1 See Comparison
NZ_CP066255.1 See Comparison
NZ_CP047193.1 See Comparison
NZ_CP032241.1 See Comparison
NZ_CP064224.1 See Comparison
NZ_CP063834.1 See Comparison
NZ_CP064236.1 See Comparison
NZ_CP064242.1 See Comparison
NZ_CP064218.1 See Comparison
NZ_CP063760.1 See Comparison
NZ_CP107292.1 See Comparison
NZ_CP107298.1 See Comparison
NZ_MH643786.1 See Comparison
NZ_CP116492.1 See Comparison
NZ_OM791346.1 See Comparison
NZ_CP106913.1 See Comparison
NZ_CP106908.1 See Comparison
NZ_CP103316.1 See Comparison
NZ_CP083992.1 See Comparison
NZ_CP102193.1 See Comparison
NZ_CP102187.1 See Comparison
NZ_CP066905.1 See Comparison
NZ_MZ546617.1 See Comparison
NZ_CP099414.1 See Comparison
NZ_CP072558.1 See Comparison
NZ_CP091069.1 See Comparison
NZ_CP087652.1 See Comparison
NZ_CP087664.1 See Comparison
NZ_CP087658.1 See Comparison
NZ_CP065555.1 See Comparison
NZ_CP090206.1 See Comparison
NZ_CP088996.1 See Comparison
NZ_CP078124.1 See Comparison
NZ_MT269847.1 See Comparison
NZ_CP077778.1 See Comparison
NZ_CP152440.1 See Comparison
CP139238.1 See Comparison
CP139220.1 See Comparison
NZ_CP125344.1 See Comparison
NZ_CP125350.1 See Comparison
NZ_CP152449.1 See Comparison
NZ_CP152444.1 See Comparison
NZ_CP154274.1 See Comparison
NZ_CP141780.1 See Comparison
NZ_CP154394.1 See Comparison
NZ_CP154419.1 See Comparison
NZ_CP154304.1 See Comparison
NZ_CP034416.1 See Comparison
NZ_CP066255.1 See Comparison
NZ_CP047193.1 See Comparison
NZ_CP032241.1 See Comparison
NZ_CP064224.1 See Comparison
NZ_CP063834.1 See Comparison
NZ_CP064236.1 See Comparison
NZ_CP064242.1 See Comparison
NZ_CP064218.1 See Comparison
NZ_CP063760.1 See Comparison
NZ_CP099414.1 See Comparison
NZ_CP107298.1 See Comparison
NZ_CP106913.1 See Comparison
NZ_CP106908.1 See Comparison
NZ_OM791346.1 See Comparison
NZ_CP102193.1 See Comparison
NZ_CP102187.1 See Comparison
NZ_CP066905.1 See Comparison
NZ_MH643786.1 See Comparison
NZ_CP116492.1 See Comparison
NZ_CP107292.1 See Comparison
NZ_CP103316.1 See Comparison
NZ_CP087664.1 See Comparison
NZ_CP083992.1 See Comparison
NZ_CP072558.1 See Comparison
NZ_CP087652.1 See Comparison
NZ_MZ546617.1 See Comparison
NZ_CP087658.1 See Comparison
NZ_CP090206.1 See Comparison
NZ_CP091069.1 See Comparison
NZ_CP065555.1 See Comparison
CP139238.1 See Comparison
NZ_CP088996.1 See Comparison
NZ_CP078124.1 See Comparison
NZ_MT269847.1 See Comparison
NZ_CP077778.1 See Comparison
CP139220.1 See Comparison
NZ_CP141780.1 See Comparison
NZ_CP125344.1 See Comparison
NZ_CP125350.1 See Comparison
NZ_CP152440.1 See Comparison
NZ_CP152449.1 See Comparison
NZ_CP152444.1 See Comparison
NZ_CP127154.1 See Comparison
NZ_CP154274.1 See Comparison
NZ_CP154394.1 See Comparison
NZ_CP154419.1 See Comparison
NZ_CP154304.1 See Comparison
NZ_CP047193.1 See Comparison
NZ_CP032241.1 See Comparison
NZ_CP066255.1 See Comparison
NZ_CP034416.1 See Comparison
NZ_CP064236.1 See Comparison
NZ_CP064242.1 See Comparison
NZ_CP063760.1 See Comparison
NZ_CP064218.1 See Comparison
NZ_CP064224.1 See Comparison
NZ_CP063834.1 See Comparison
NZ_MH643786.1 See Comparison
NZ_CP107298.1 See Comparison
NZ_CP116492.1 See Comparison
NZ_CP106913.1 See Comparison
NZ_CP107292.1 See Comparison
NZ_CP106908.1 See Comparison
NZ_OM791346.1 See Comparison
NZ_CP083992.1 See Comparison
NZ_CP102193.1 See Comparison
NZ_CP102187.1 See Comparison
NZ_CP066905.1 See Comparison
NZ_CP099414.1 See Comparison
NZ_CP103316.1 See Comparison
NZ_MZ546617.1 See Comparison
NZ_CP072558.1 See Comparison
NZ_CP087652.1 See Comparison
NZ_CP087664.1 See Comparison
NZ_CP087658.1 See Comparison
NZ_CP090206.1 See Comparison
NZ_CP091069.1 See Comparison
NZ_CP078124.1 See Comparison
NZ_CP065555.1 See Comparison
NZ_CP088996.1 See Comparison
NZ_MT269847.1 See Comparison
NZ_CP077778.1 See Comparison
CP139238.1 See Comparison
CP139220.1 See Comparison
NZ_CP063760.1 See Comparison
NZ_CP154394.1 See Comparison
NZ_CP154419.1 See Comparison
NZ_CP154304.1 See Comparison
NZ_CP152440.1 See Comparison
NZ_CP152449.1 See Comparison
NZ_CP152444.1 See Comparison
NZ_CP141780.1 See Comparison
NZ_CP034416.1 See Comparison
NZ_CP066255.1 See Comparison
NZ_CP064236.1 See Comparison
NZ_CP125344.1 See Comparison
NZ_CP125350.1 See Comparison
NZ_CP154274.1 See Comparison
NZ_CP047193.1 See Comparison
NZ_CP032241.1 See Comparison
NZ_CP116492.1 See Comparison
NZ_MH643786.1 See Comparison
NZ_CP064242.1 See Comparison
NZ_CP064218.1 See Comparison
NZ_CP064224.1 See Comparison
NZ_CP063834.1 See Comparison
NZ_CP083992.1 See Comparison
NZ_CP107292.1 See Comparison
NZ_OM791346.1 See Comparison
NZ_CP103316.1 See Comparison
NZ_CP102193.1 See Comparison
NZ_CP102187.1 See Comparison
NZ_MZ546617.1 See Comparison
NZ_CP107298.1 See Comparison
NZ_CP106913.1 See Comparison
NZ_CP106908.1 See Comparison
NZ_CP066905.1 See Comparison
NZ_CP099414.1 See Comparison
NZ_CP072558.1 See Comparison
NZ_CP087658.1 See Comparison
NZ_CP087652.1 See Comparison
NZ_CP087664.1 See Comparison
NZ_CP090206.1 See Comparison
NZ_CP091069.1 See Comparison
NZ_CP125344.1 See Comparison
NZ_CP065555.1 See Comparison
NZ_CP078124.1 See Comparison
NZ_CP077778.1 See Comparison
NZ_CP088996.1 See Comparison
NZ_MT269847.1 See Comparison
CP139238.1 See Comparison
CP139220.1 See Comparison
NZ_CP125350.1 See Comparison
NZ_CP154394.1 See Comparison
NZ_CP154419.1 See Comparison
NZ_CP154304.1 See Comparison
NZ_CP152440.1 See Comparison
NZ_CP152449.1 See Comparison
NZ_CP152444.1 See Comparison
NZ_CP154274.1 See Comparison
NZ_CP141780.1 See Comparison
NZ_CP034416.1 See Comparison
NZ_CP047193.1 See Comparison
NZ_CP032241.1 See Comparison
NZ_CP066255.1 See Comparison
NZ_CP064236.1 See Comparison
NZ_CP064242.1 See Comparison
NZ_CP064218.1 See Comparison
NZ_CP064224.1 See Comparison
NZ_CP063760.1 See Comparison
NZ_CP063834.1 See Comparison
NZ_MH643786.1 See Comparison
NZ_CP107292.1 See Comparison
NZ_CP107298.1 See Comparison
NZ_CP116492.1 See Comparison
NZ_OM791346.1 See Comparison
NZ_CP106913.1 See Comparison
NZ_CP103316.1 See Comparison
NZ_CP106908.1 See Comparison
NZ_CP102187.1 See Comparison
NZ_MZ546617.1 See Comparison
NZ_CP102193.1 See Comparison
NZ_CP066905.1 See Comparison
NZ_CP099414.1 See Comparison
NZ_CP087658.1 See Comparison
NZ_CP083992.1 See Comparison
NZ_CP072558.1 See Comparison
NZ_CP087652.1 See Comparison
NZ_CP087664.1 See Comparison
NZ_CP065555.1 See Comparison
NZ_CP091069.1 See Comparison
NZ_CP090206.1 See Comparison
NZ_CP047193.1 See Comparison
NZ_CP078124.1 See Comparison
NZ_CP077778.1 See Comparison
NZ_CP125344.1 See Comparison
NZ_CP125350.1 See Comparison
NZ_CP154274.1 See Comparison
NZ_CP154394.1 See Comparison
NZ_CP088996.1 See Comparison
NZ_MT269847.1 See Comparison
CP139238.1 See Comparison
CP139220.1 See Comparison
NZ_CP154419.1 See Comparison
NZ_CP154304.1 See Comparison
NZ_CP152440.1 See Comparison
NZ_CP152449.1 See Comparison
NZ_CP152444.1 See Comparison
NZ_CP141780.1 See Comparison
NZ_CP032241.1 See Comparison
NZ_CP034416.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)



Biosynthetic Gene Clusters

based on ANTISMASH

Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore