Plasmid NZ_CP083992.1

Sequence

Nucleotide Information

Accession	NZ_CP083992.1
Description	Escherichia coli strain EC2648-Vir2 plasmid pKP2648-VirV, complete sequence
Source	refseq
Topology	circular
Length	222599 bp
GC Content	0.50 %
Created at NCBI	June 8, 2022

Host Taxonomy

According to NCBI Taxonomy

Assigned Host	Escherichia coli (562)

Lineage

Superkingdom	Bacteria (2)
Phylum	Pseudomonadota (1224)
Class	Gammaproteobacteria (1236)
Order	Enterobacterales (91347)
Family	Enterobacteriaceae (543)
Genus	Escherichia (561)
Species	Escherichia_coli (562)
Strain

Assembly

Genome Data Information

Accession	GCF_023653845.1
Assembly Coverage	956

Biosample

Curated Collection Information

Accession	21553517

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION

Original Query	China
Original Query Type	name
Coordinates (Lat/Lon)	34.41/86.03
Address	China

ECOSYSTEM

Original Query	cell culture,conjugation assay
Classification	cell_culture
Host-associated Taxon

DISEASE

Original Query	None
DOID/SYMP

Visualization

Plasmids from same Biosample

NZ_CP083991.1

Similar Plasmids

based on Mash distance

NZ_CP116492.1	See Comparison
NZ_CP107298.1	See Comparison
NZ_CP107292.1	See Comparison
NZ_CP106913.1	See Comparison
NZ_CP106908.1	See Comparison
NZ_OM791346.1	See Comparison
NZ_CP103316.1	See Comparison
NZ_CP102187.1	See Comparison
NZ_CP066905.1	See Comparison
NZ_CP099414.1	See Comparison
NZ_MZ546617.1	See Comparison
NZ_CP072558.1	See Comparison
NZ_CP087664.1	See Comparison
NZ_CP087658.1	See Comparison
NZ_CP087652.1	See Comparison
NZ_CP091069.1	See Comparison
NZ_CP090206.1	See Comparison
NZ_CP088996.1	See Comparison
NZ_CP078124.1	See Comparison
NZ_CP077778.1	See Comparison
NZ_CP034416.1	See Comparison
NZ_MT269847.1	See Comparison
CP139238.1	See Comparison
CP139220.1	See Comparison
NZ_CP127154.1	See Comparison
NZ_CP125350.1	See Comparison
NZ_CP154274.1	See Comparison
NZ_CP154394.1	See Comparison
NZ_CP154419.1	See Comparison
NZ_CP152440.1	See Comparison
NZ_CP152449.1	See Comparison
NZ_CP152444.1	See Comparison
NZ_CP125344.1	See Comparison
NZ_CP047193.1	See Comparison
NZ_CP032241.1	See Comparison
NZ_CP107298.1	See Comparison
NZ_CP063834.1	See Comparison
NZ_CP063760.1	See Comparison
NZ_CP116492.1	See Comparison
NZ_CP066255.1	See Comparison
NZ_CP064236.1	See Comparison
NZ_CP064218.1	See Comparison
NZ_CP064224.1	See Comparison
NZ_CP106913.1	See Comparison
NZ_CP107292.1	See Comparison
NZ_CP106908.1	See Comparison
NZ_CP066905.1	See Comparison
NZ_OM791346.1	See Comparison
NZ_CP102187.1	See Comparison
NZ_CP103316.1	See Comparison
NZ_CP099414.1	See Comparison
NZ_CP091069.1	See Comparison
NZ_CP072558.1	See Comparison
NZ_CP087664.1	See Comparison
NZ_CP087658.1	See Comparison
NZ_CP087652.1	See Comparison
NZ_CP090206.1	See Comparison
NZ_MZ546617.1	See Comparison
NZ_CP078124.1	See Comparison
NZ_CP088996.1	See Comparison
NZ_CP077778.1	See Comparison
NZ_CP034416.1	See Comparison
CP139238.1	See Comparison
CP139220.1	See Comparison
NZ_CP127154.1	See Comparison
NZ_CP154394.1	See Comparison
NZ_CP154419.1	See Comparison
NZ_CP152440.1	See Comparison
NZ_CP152449.1	See Comparison
NZ_CP152444.1	See Comparison
NZ_MT269847.1	See Comparison
NZ_CP125344.1	See Comparison
NZ_CP125350.1	See Comparison
NZ_CP154274.1	See Comparison
NZ_CP047193.1	See Comparison
NZ_CP032241.1	See Comparison
NZ_CP066255.1	See Comparison
NZ_CP064236.1	See Comparison
NZ_CP064218.1	See Comparison
NZ_CP063760.1	See Comparison
NZ_CP064224.1	See Comparison
NZ_CP063834.1	See Comparison
NZ_CP116492.1	See Comparison
NZ_CP072558.1	See Comparison
NZ_CP107292.1	See Comparison
NZ_OM791346.1	See Comparison
NZ_CP103316.1	See Comparison
NZ_CP102187.1	See Comparison
NZ_MZ546617.1	See Comparison
NZ_CP107298.1	See Comparison
NZ_CP106913.1	See Comparison
NZ_CP106908.1	See Comparison
NZ_CP066905.1	See Comparison
NZ_CP099414.1	See Comparison
NZ_CP091069.1	See Comparison
NZ_CP087658.1	See Comparison
NZ_CP087652.1	See Comparison
NZ_CP087664.1	See Comparison
NZ_CP078124.1	See Comparison
NZ_CP088996.1	See Comparison
NZ_CP090206.1	See Comparison
NZ_CP077778.1	See Comparison
NZ_CP127154.1	See Comparison
CP139238.1	See Comparison
CP139220.1	See Comparison
NZ_MT269847.1	See Comparison
NZ_CP125344.1	See Comparison
NZ_CP125350.1	See Comparison
NZ_CP154274.1	See Comparison
NZ_CP154394.1	See Comparison
NZ_CP154419.1	See Comparison
NZ_CP152440.1	See Comparison
NZ_CP152449.1	See Comparison
NZ_CP047193.1	See Comparison
NZ_CP152444.1	See Comparison
NZ_CP032241.1	See Comparison
NZ_CP066255.1	See Comparison
NZ_CP034416.1	See Comparison
NZ_CP064236.1	See Comparison
NZ_CP064224.1	See Comparison
NZ_CP063834.1	See Comparison
NZ_CP064218.1	See Comparison
NZ_CP063760.1	See Comparison
NZ_CP107298.1	See Comparison
NZ_CP116492.1	See Comparison
NZ_OM791346.1	See Comparison
NZ_CP107292.1	See Comparison
NZ_CP106913.1	See Comparison
NZ_CP103316.1	See Comparison
NZ_CP106908.1	See Comparison
NZ_CP102187.1	See Comparison
NZ_CP066905.1	See Comparison
NZ_CP099414.1	See Comparison
NZ_CP087664.1	See Comparison
NZ_CP083992.1	See Comparison
NZ_CP072558.1	See Comparison
NZ_MZ546617.1	See Comparison
NZ_CP087658.1	See Comparison
NZ_CP087652.1	See Comparison
NZ_CP090206.1	See Comparison
NZ_CP091069.1	See Comparison
NZ_CP078124.1	See Comparison
NZ_CP088996.1	See Comparison
NZ_CP077778.1	See Comparison
CP139238.1	See Comparison
NZ_MT269847.1	See Comparison
CP139220.1	See Comparison
NZ_CP127154.1	See Comparison
NZ_CP125344.1	See Comparison
NZ_CP125350.1	See Comparison
NZ_CP154274.1	See Comparison
NZ_CP152440.1	See Comparison
NZ_CP152449.1	See Comparison
NZ_CP154394.1	See Comparison
NZ_CP152444.1	See Comparison
NZ_CP154419.1	See Comparison
NZ_CP034416.1	See Comparison
NZ_CP047193.1	See Comparison
NZ_CP032241.1	See Comparison
NZ_CP066255.1	See Comparison
NZ_CP064224.1	See Comparison
NZ_CP063834.1	See Comparison
NZ_CP064236.1	See Comparison
NZ_CP064218.1	See Comparison
NZ_CP063760.1	See Comparison
NZ_CP116492.1	See Comparison
NZ_CP107292.1	See Comparison
NZ_CP107298.1	See Comparison
NZ_OM791346.1	See Comparison
NZ_CP106913.1	See Comparison
NZ_CP106908.1	See Comparison
NZ_CP103316.1	See Comparison
NZ_CP072558.1	See Comparison
NZ_CP102187.1	See Comparison
NZ_CP066905.1	See Comparison
NZ_MZ546617.1	See Comparison
NZ_CP099414.1	See Comparison
NZ_CP087664.1	See Comparison
NZ_CP087652.1	See Comparison
NZ_CP087658.1	See Comparison
NZ_CP090206.1	See Comparison
NZ_CP091069.1	See Comparison
CP139238.1	See Comparison
NZ_CP088996.1	See Comparison
NZ_CP078124.1	See Comparison
NZ_MT269847.1	See Comparison
NZ_CP077778.1	See Comparison
CP139220.1	See Comparison
NZ_CP152440.1	See Comparison
NZ_CP127154.1	See Comparison
NZ_CP125344.1	See Comparison
NZ_CP125350.1	See Comparison
NZ_CP152449.1	See Comparison
NZ_CP152444.1	See Comparison
NZ_CP047193.1	See Comparison
NZ_CP154274.1	See Comparison
NZ_CP154394.1	See Comparison
NZ_CP154419.1	See Comparison
NZ_CP032241.1	See Comparison
NZ_CP116492.1	See Comparison
NZ_CP064236.1	See Comparison
NZ_CP064218.1	See Comparison
NZ_CP034416.1	See Comparison
NZ_CP066255.1	See Comparison
NZ_CP064224.1	See Comparison
NZ_CP063834.1	See Comparison
NZ_CP063760.1	See Comparison
NZ_CP099414.1	See Comparison
NZ_CP107292.1	See Comparison
NZ_CP102187.1	See Comparison
NZ_CP066905.1	See Comparison
NZ_CP107298.1	See Comparison
NZ_CP106913.1	See Comparison
NZ_CP106908.1	See Comparison
NZ_OM791346.1	See Comparison
NZ_CP103316.1	See Comparison
NZ_CP087664.1	See Comparison
NZ_CP072558.1	See Comparison
NZ_CP087652.1	See Comparison
NZ_MZ546617.1	See Comparison
NZ_CP087658.1	See Comparison
NZ_CP078124.1	See Comparison
NZ_CP091069.1	See Comparison
NZ_CP088996.1	See Comparison
NZ_CP090206.1	See Comparison
NZ_CP077778.1	See Comparison
NZ_CP152440.1	See Comparison
NZ_MT269847.1	See Comparison
CP139238.1	See Comparison
CP139220.1	See Comparison
NZ_CP127154.1	See Comparison
NZ_CP125344.1	See Comparison
NZ_CP125350.1	See Comparison
NZ_CP154274.1	See Comparison
NZ_CP154394.1	See Comparison
NZ_CP154419.1	See Comparison
NZ_CP152449.1	See Comparison
NZ_CP152444.1	See Comparison
NZ_CP064236.1	See Comparison
NZ_CP064218.1	See Comparison
NZ_CP064224.1	See Comparison
NZ_CP063834.1	See Comparison
NZ_CP047193.1	See Comparison
NZ_CP032241.1	See Comparison
NZ_CP034416.1	See Comparison
NZ_CP066255.1	See Comparison
NZ_CP063760.1	See Comparison

Plasmid Visualization

NUCCORE ACC	Source	Element Name	Display	Sequence	Favorite
NUCCORE ACC	Source	Element Name	Display	Sequence	Favorite

Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)

NUCCORE ACC	Gene	Locus Tag	Product	Protein id	Codon Start	Translation Table	GO process
NUCCORE ACC	Gene	Locus Tag	Product	Protein id	Codon Start	Translation Table	GO process

Antimicrobial Resistance

based on NCBIAMRFinder and CARD

NUCCORE ACC	Analysis Software Name	Reference Database Version	Gene Symbol	Gene Name	Drug Class	Antimicrobial Agent	Gene Start	Gene Stop	Gene Length	Strand Orientation	Sequence Identity (%)	Coverage (%)
NUCCORE ACC	Analysis Software Name	Reference Database Version	Gene Symbol	Gene Name	Drug Class	Antimicrobial Agent	Gene Start	Gene Stop	Gene Length	Strand Orientation	Sequence Identity (%)	Coverage (%)

Biosynthetic Gene Clusters

based on ANTISMASH

Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)

NUCCORE ACC	Contigs	md5 hash	Replicon Type	Relaxase Type	MPF Type	OriT Type	Predicted Mobility	Primary Cluster ID	Secondary Cluster ID	Observed Host Range Ncbi Rank	Observed Host Range Ncbi Name	Mash Nearest Neighbor	Mash Neighbor Distance	Mash Neighbor Identification	Reported Host Range Lit Rank	Reported Host Range Lit Name	Replicon Type Accession	Relaxase Type Accession	MPF Type Accession	OriT Type Accession	Associated PMID(s)
NUCCORE ACC	Contigs	md5 hash	Replicon Type	Relaxase Type	MPF Type	OriT Type	Predicted Mobility	Primary Cluster ID	Secondary Cluster ID	Observed Host Range Ncbi Rank	Observed Host Range Ncbi Name	Mash Nearest Neighbor	Mash Neighbor Distance	Mash Neighbor Identification	Reported Host Range Lit Rank	Reported Host Range Lit Name	Replicon Type Accession	Relaxase Type Accession	MPF Type Accession	OriT Type Accession	Associated PMID(s)

BLAST results of detected typing markers by MOB-type

NUCCORE ACC	biomarker	MOB-suite ID	Element	Start	End	Strand	Identity	Coverage	Evalue	Bitscore
NUCCORE ACC	biomarker	MOB-suite ID	Element	Start	End	Strand	Identity	Coverage	Evalue	Bitscore