Plasmid NZ_CP124431.1

Sequence

Nucleotide Information

Accession NZ_CP124431.1
Description Escherichia coli strain AVS0051 plasmid pAVS0051-B, complete sequence
Source refseq
Topology circular
Length 87732 bp
GC Content 0.50 %
Created at NCBI May 21, 2023



Assembly

Genome Data Information

Accession GCF_030038915.1
Assembly Coverage None


Biosample

Curated Collection Information
Accession 34360971

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query Switzerland,Kanton Zug
Original Query Type name
Coordinates (Lat/Lon) 47.15/8.55
Address Switzerland,Kanton Zug

ECOSYSTEM
Original Query environmental: river/lake
Classification aquatic,freshwater,river
Host-associated Taxon

DISEASE
Original Query None
DOID/SYMP

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

NZ_CP124431.1 See Comparison


Plasmid Visualization

JSON GENBANK

SourceElement Name Display Sequence Favorite
PGAGrepAcopy
PGAGhypothetical proteincopy
PGAGProQ/FINO family proteincopy
PGAGyagAcopy
PGAGcolicin Ia central receptor-binding domain-containing proteincopy
PGAGcolicin 1A immunity proteincopy
PGAGDUF6404 family proteincopy
PGAGhypothetical proteincopy
PGAGhypothetical proteincopy
PGAGhypothetical proteincopy
SourceElement NameDisplaySequenceFavorite
Showing 1 to 10 of 110 entries
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Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process
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NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACCReplicon TypeRelaxase TypeMPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank
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NUCCORE ACCReplicon TypeRelaxase TypeMPF TypeOriT TypePredicted MobilityPrimary Cluster IDSecondary Cluster IDObserved Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank




BLAST results of detected typing markers by MOB-type
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
oriTHM021326MOBP3421434306minus1001004.37e-41172
mate-pair-formationNC_019097_00056MPF_I3744239703minus98.8069201446
repliconEU418926IncI1/B/O11032plus10010001906
relaxaseNC_019097MOBP3467637369plus95.2129901685
mate-pair-formationNC_022267_00057MPF_I4787349072minus99.751000772
mate-pair-formationNC_019111_00038MPF_I5382654227minus97.7611001.18e-51181
mate-pair-formationNC_023290_00086MPF_I5428154805minus99.4291003.4000000000000003e-100322
mate-pair-formationNC_015965_00072MPF_I5480855509minus99.5731004.56e-153477
mate-pair-formationNC_019097_00075MPF_I5680457784minus99.6941000656
mate-pair-formationNC_022267_00069MPF_I5784058487minus98.148916.16e-142445
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
Showing 1 to 10 of 12 entries


Detected typing markers by plasmidfinder
NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2
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NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2