Plasmid NZ_CP123661.1

Sequence

Nucleotide Information

Accession NZ_CP123661.1
Description Salmonella enterica subsp. enterica serovar Kentucky strain CVM N38232 plasmid pN38232-1, complete sequence
Source refseq
Topology circular
Length 146005 bp
GC Content 0.49 %
Created at NCBI April 20, 2023



Assembly

Genome Data Information

Accession GCF_001479685.2
Assembly Coverage 391


Biosample

Curated Collection Information
Accession 2699274

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query USA,MD
Original Query Type name
Coordinates (Lat/Lon) 39.52/-76.94
Address USA,MD

ECOSYSTEM
Original Query chicken breast
Classification host_associated,mamary
Host-associated Taxon
  • Gallus gallus (9031)

DISEASE
Original Query None
DOID/SYMP

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

NZ_CP070116.1 See Comparison
CP066319.1 See Comparison
NZ_CP051347.1 See Comparison
CP119488.1 See Comparison
CP119484.1 See Comparison
CP066319.1 See Comparison
CP074248.1 See Comparison
CP074243.1 See Comparison
NC_018966.1 See Comparison
NC_018954.1 See Comparison
CP082532.1 See Comparison
CP082562.1 See Comparison
CP082567.1 See Comparison
CP082655.1 See Comparison
CP082749.1 See Comparison
CP082719.1 See Comparison
CP082603.1 See Comparison
NZ_CP051347.1 See Comparison
CP119488.1 See Comparison
NZ_CP070116.1 See Comparison
CP119484.1 See Comparison
CP082532.1 See Comparison
CP082562.1 See Comparison
CP082567.1 See Comparison
CP082655.1 See Comparison
CP082749.1 See Comparison
CP082719.1 See Comparison
CP082603.1 See Comparison
CP074248.1 See Comparison
CP074243.1 See Comparison
CP066319.1 See Comparison
NZ_CP070116.1 See Comparison
NC_018966.1 See Comparison
NC_018954.1 See Comparison
NZ_CP051347.1 See Comparison
NC_018966.1 See Comparison
CP082532.1 See Comparison
CP074248.1 See Comparison
CP074243.1 See Comparison
CP119488.1 See Comparison
CP119484.1 See Comparison
CP082562.1 See Comparison
CP082567.1 See Comparison
CP082655.1 See Comparison
CP082749.1 See Comparison
CP082719.1 See Comparison
CP082603.1 See Comparison
NC_018954.1 See Comparison
NZ_CP070116.1 See Comparison
NZ_CP051347.1 See Comparison
NZ_CP123661.1 See Comparison
CP119488.1 See Comparison
CP119484.1 See Comparison
NC_018966.1 See Comparison
NC_018954.1 See Comparison
CP066319.1 See Comparison
CP082532.1 See Comparison
CP082562.1 See Comparison
CP082567.1 See Comparison
CP082655.1 See Comparison
CP082749.1 See Comparison
CP082719.1 See Comparison
CP082603.1 See Comparison
CP074248.1 See Comparison
CP074243.1 See Comparison
CP066319.1 See Comparison
CP066319.1 See Comparison
NZ_CP051347.1 See Comparison
CP119488.1 See Comparison
CP119484.1 See Comparison
CP082532.1 See Comparison
CP082562.1 See Comparison
CP082567.1 See Comparison
CP082655.1 See Comparison
CP082749.1 See Comparison
CP082719.1 See Comparison
CP082603.1 See Comparison
NC_018966.1 See Comparison
NC_018954.1 See Comparison
NZ_CP070116.1 See Comparison
NZ_CP070116.1 See Comparison
CP074248.1 See Comparison
CP074243.1 See Comparison
NZ_CP051347.1 See Comparison
CP082719.1 See Comparison
CP119488.1 See Comparison
CP119484.1 See Comparison
CP082532.1 See Comparison
CP082562.1 See Comparison
CP082567.1 See Comparison
CP082603.1 See Comparison
CP074248.1 See Comparison
CP082655.1 See Comparison
CP082749.1 See Comparison
CP074243.1 See Comparison
NC_018966.1 See Comparison
NC_018954.1 See Comparison
CP119488.1 See Comparison
NZ_CP070116.1 See Comparison
CP066319.1 See Comparison
NZ_CP051347.1 See Comparison
CP119484.1 See Comparison
CP082532.1 See Comparison
CP082562.1 See Comparison
CP082567.1 See Comparison
CP082655.1 See Comparison
CP082749.1 See Comparison
CP082719.1 See Comparison
CP082603.1 See Comparison
CP074248.1 See Comparison
CP074243.1 See Comparison
NC_018966.1 See Comparison
NC_018954.1 See Comparison


Plasmid Visualization

JSON GENBANK

SourceElement Name Display Sequence Favorite
amrfinderplustet(B)copy
amrfinderplusaph(3'')-Ibcopy
amrfinderplusaph(6)-Idcopy
amrfinderpluscvaBcopy
amrfinderplusiucBcopy
amrfinderplusiucCcopy
amrfinderplusiroNcopy
amrfinderplusiucAcopy
amrfinderplusisscopy
amrfinderplusiucDcopy
SourceElement NameDisplaySequenceFavorite
Showing 1 to 10 of 146 entries
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Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process
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NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD
NUCCORE ACCAnalysis Software NameReference Database VersionGene SymbolGene NameDrug ClassAntimicrobial AgentGene StartGene StopGene LengthStrand OrientationSequence Identity (%)Coverage (%)
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NUCCORE ACCAnalysis Software NameReference Database VersionGene SymbolGene NameDrug ClassAntimicrobial AgentGene StartGene StopGene LengthStrand OrientationSequence Identity (%)Coverage (%)



Biosynthetic Gene Clusters

based on ANTISMASH

Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACCReplicon TypeRelaxase TypeMPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank
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NUCCORE ACCReplicon TypeRelaxase TypeMPF TypeOriT TypePredicted MobilityPrimary Cluster IDSecondary Cluster IDObserved Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank




BLAST results of detected typing markers by MOB-type
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
oriTAF242367MOBF4645546745plus1001001.4999999999999998e-150538
replicon000095__NZ_CP014273_00094IncFIB57176694minus98.46610001724
repliconCP033091_00053rep_cluster_22449695197808plus97.20310001430
relaxaseNC_017627_00068MOBF7170176968plus97.89310003368
mate-pair-formationNC_022651_00077MPF_F4898349291plus100994.03e-63213
mate-pair-formationNC_010409_00124MPF_F4986950594plus98.761004.19e-156486
mate-pair-formationNC_019094_00090MPF_F5059751991plus96.137960815
mate-pair-formationNC_017639_00094MPF_F5304853560plus96.4911004.48e-96310
mate-pair-formationNC_013437_00116MPF_T5407956700plus91.3049901647
mate-pair-formationNC_007675_00027MPF_F5708657715plus99.524977.559999999999999e-136427
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
Showing 1 to 10 of 15 entries


Detected typing markers by plasmidfinder
NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2
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NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2