Plasmid NC_018954.1

Sequence

Nucleotide Information

Accession NC_018954.1
Description Salmonella enterica subsp. enterica serovar Kentucky plasmid pCS0010A, complete sequence
Source refseq
Topology circular
Length 146811 bp
GC Content 0.49 %
Created at NCBI Nov. 4, 2012



Biosample

Curated Collection Information
Accession 14224401

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query None
Original Query Type None
Coordinates (Lat/Lon)
Address None

ECOSYSTEM
Original Query chicken,cloaca
Classification host_associated
Host-associated Taxon
  • Gallus gallus (9031)

DISEASE
Original Query None
DOID/SYMP

Visualization

PNG JSON



Similar Plasmids

based on Mash distance

NZ_CP070116.1 See Comparison
CP066319.1 See Comparison
NZ_CP051347.1 See Comparison
CP119488.1 See Comparison
CP119484.1 See Comparison
CP119488.1 See Comparison
NC_018966.1 See Comparison
CP066319.1 See Comparison
NZ_CP051347.1 See Comparison
CP082532.1 See Comparison
CP082562.1 See Comparison
CP082567.1 See Comparison
CP082655.1 See Comparison
CP082749.1 See Comparison
CP082719.1 See Comparison
CP082603.1 See Comparison
CP074248.1 See Comparison
CP074243.1 See Comparison
NZ_CP123661.1 See Comparison
NZ_CP070116.1 See Comparison
CP119484.1 See Comparison
CP082562.1 See Comparison
CP082567.1 See Comparison
CP082655.1 See Comparison
CP082749.1 See Comparison
CP082532.1 See Comparison
CP082719.1 See Comparison
CP082603.1 See Comparison
NZ_CP070116.1 See Comparison
CP074248.1 See Comparison
CP074243.1 See Comparison
NC_018966.1 See Comparison
NZ_CP123661.1 See Comparison
CP082532.1 See Comparison
CP066319.1 See Comparison
NZ_CP051347.1 See Comparison
CP119488.1 See Comparison
CP119484.1 See Comparison
CP082562.1 See Comparison
CP082567.1 See Comparison
NZ_CP123661.1 See Comparison
CP082655.1 See Comparison
CP082749.1 See Comparison
CP082719.1 See Comparison
CP082603.1 See Comparison
CP074248.1 See Comparison
CP074243.1 See Comparison
NC_018966.1 See Comparison
NC_018954.1 See Comparison
NZ_CP070116.1 See Comparison
CP119488.1 See Comparison
CP119484.1 See Comparison
CP082532.1 See Comparison
CP082562.1 See Comparison
CP082567.1 See Comparison
CP082655.1 See Comparison
CP082749.1 See Comparison
NZ_CP123661.1 See Comparison
CP066319.1 See Comparison
NZ_CP051347.1 See Comparison
CP082719.1 See Comparison
CP082603.1 See Comparison
CP074248.1 See Comparison
CP074243.1 See Comparison
NC_018966.1 See Comparison
NZ_CP070116.1 See Comparison
CP082719.1 See Comparison
CP066319.1 See Comparison
NZ_CP051347.1 See Comparison
CP119488.1 See Comparison
CP119484.1 See Comparison
CP082603.1 See Comparison
CP066319.1 See Comparison
CP082532.1 See Comparison
CP082562.1 See Comparison
CP082567.1 See Comparison
CP082655.1 See Comparison
CP082749.1 See Comparison
NC_018966.1 See Comparison
NZ_CP123661.1 See Comparison
CP074248.1 See Comparison
CP074243.1 See Comparison
NZ_CP070116.1 See Comparison
NZ_CP051347.1 See Comparison
NC_018966.1 See Comparison
CP082603.1 See Comparison
CP074248.1 See Comparison
CP074243.1 See Comparison
CP119488.1 See Comparison
CP119484.1 See Comparison
CP082532.1 See Comparison
CP082562.1 See Comparison
CP082567.1 See Comparison
CP082655.1 See Comparison
CP082749.1 See Comparison
CP082719.1 See Comparison
NZ_CP123661.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)



Biosynthetic Gene Clusters

based on ANTISMASH

Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore