Plasmid CP082562.1

Sequence

Nucleotide Information

Accession CP082562.1
Description Salmonella enterica subsp. enterica serovar Kentucky strain CVM N18S1563 plasmid pN18S1563-1, complete sequence
Source insd
Topology circular
Length 148162 bp
GC Content 0.49 %
Created at NCBI Aug. 30, 2021



Assembly

Genome Data Information

Accession GCA_007861625.2
Assembly Coverage 375


Biosample

Curated Collection Information
Accession 12360188

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query USA,TN
Original Query Type name
Coordinates (Lat/Lon) 35.77/-86.28
Address USA,TN

ECOSYSTEM
Original Query Chicken Breasts
Classification host_associated,mamary
Host-associated Taxon
  • Gallus gallus (9031)

DISEASE
Original Query None
DOID/SYMP

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

NZ_CP070116.1 See Comparison
CP066319.1 See Comparison
NZ_CP051347.1 See Comparison
CP119488.1 See Comparison
CP119484.1 See Comparison
NZ_CP070116.1 See Comparison
NZ_CP123661.1 See Comparison
CP082532.1 See Comparison
CP082562.1 See Comparison
CP082567.1 See Comparison
CP082655.1 See Comparison
CP082749.1 See Comparison
CP082719.1 See Comparison
CP082603.1 See Comparison
CP074248.1 See Comparison
CP074243.1 See Comparison
NC_018966.1 See Comparison
NC_018954.1 See Comparison
NZ_CP070116.1 See Comparison
NZ_CP051347.1 See Comparison
CP119488.1 See Comparison
CP119484.1 See Comparison
CP074248.1 See Comparison
CP074243.1 See Comparison
NC_018966.1 See Comparison
NC_018954.1 See Comparison
NZ_CP123661.1 See Comparison
CP066319.1 See Comparison
CP082532.1 See Comparison
CP082567.1 See Comparison
CP082655.1 See Comparison
CP082749.1 See Comparison
CP082719.1 See Comparison
CP082603.1 See Comparison
CP082532.1 See Comparison
NZ_CP051347.1 See Comparison
CP082655.1 See Comparison
CP082749.1 See Comparison
CP082719.1 See Comparison
CP082603.1 See Comparison
CP066319.1 See Comparison
CP119488.1 See Comparison
CP119484.1 See Comparison
CP082567.1 See Comparison
NZ_CP051347.1 See Comparison
CP074248.1 See Comparison
CP074243.1 See Comparison
NC_018966.1 See Comparison
NC_018954.1 See Comparison
NZ_CP123661.1 See Comparison
NZ_CP070116.1 See Comparison
NC_018966.1 See Comparison
CP119488.1 See Comparison
CP119484.1 See Comparison
CP074248.1 See Comparison
CP074243.1 See Comparison
CP066319.1 See Comparison
CP082532.1 See Comparison
CP082567.1 See Comparison
CP082655.1 See Comparison
CP082749.1 See Comparison
CP082719.1 See Comparison
CP082603.1 See Comparison
NC_018954.1 See Comparison
NZ_CP070116.1 See Comparison
NZ_CP123661.1 See Comparison
CP066319.1 See Comparison
NZ_CP051347.1 See Comparison
CP119488.1 See Comparison
CP119484.1 See Comparison
CP082532.1 See Comparison
CP082567.1 See Comparison
CP082655.1 See Comparison
CP082749.1 See Comparison
CP074248.1 See Comparison
CP082719.1 See Comparison
CP074243.1 See Comparison
NC_018966.1 See Comparison
NC_018954.1 See Comparison
NC_018966.1 See Comparison
CP082603.1 See Comparison
NZ_CP123661.1 See Comparison
NZ_CP070116.1 See Comparison
CP066319.1 See Comparison
NZ_CP051347.1 See Comparison
CP074248.1 See Comparison
CP074243.1 See Comparison
CP119488.1 See Comparison
CP119484.1 See Comparison
CP082532.1 See Comparison
CP082567.1 See Comparison
CP082655.1 See Comparison
CP082749.1 See Comparison
CP082719.1 See Comparison
CP082603.1 See Comparison
NC_018954.1 See Comparison
NZ_CP123661.1 See Comparison
CP066319.1 See Comparison
NZ_CP070116.1 See Comparison
NZ_CP051347.1 See Comparison
CP082532.1 See Comparison
CP119488.1 See Comparison
CP119484.1 See Comparison
CP082567.1 See Comparison
CP082655.1 See Comparison
CP082719.1 See Comparison
CP082749.1 See Comparison
CP082603.1 See Comparison
NZ_CP123661.1 See Comparison
CP074248.1 See Comparison
CP074243.1 See Comparison
NC_018966.1 See Comparison
NC_018954.1 See Comparison


Plasmid Visualization

JSON GENBANK

SourceElement Name Display Sequence Favorite
amrfinderplusaph(3'')-Ibcopy
amrfinderplusiucAcopy
amrfinderplusiucBcopy
amrfinderplusiroNcopy
amrfinderplusisscopy
amrfinderplusiucCcopy
amrfinderplusiucDcopy
amrfinderplusiroCcopy
amrfinderplusiroEcopy
amrfinderplusiroDcopy
SourceElement NameDisplaySequenceFavorite
Showing 1 to 10 of 149 entries
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Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process
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NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD
NUCCORE ACCAnalysis Software NameReference Database VersionGene SymbolGene NameDrug ClassAntimicrobial AgentGene StartGene StopGene LengthStrand OrientationSequence Identity (%)Coverage (%)
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NUCCORE ACCAnalysis Software NameReference Database VersionGene SymbolGene NameDrug ClassAntimicrobial AgentGene StartGene StopGene LengthStrand OrientationSequence Identity (%)Coverage (%)



Biosynthetic Gene Clusters

based on ANTISMASH

Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACCReplicon TypeRelaxase TypeMPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank
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NUCCORE ACCReplicon TypeRelaxase TypeMPF TypeOriT TypePredicted MobilityPrimary Cluster IDSecondary Cluster IDObserved Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank




BLAST results of detected typing markers by MOB-type
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
repliconCP033091_00053rep_cluster_224410621919minus97.20310001430
repliconAY458016IncFIC19172178plus96.9471001.39e-120438
replicon000095__NZ_CP014273_00094IncFIB9299393970plus98.46610001724
relaxaseNC_017627_00068MOBF2190227169minus97.89310003368
oriTAF242367MOBF5213652426minus1001001.4999999999999998e-150538
mate-pair-formation08-5333_00200MPF_Unknown2717229385minus10010001473
mate-pair-formationNC_009837_00049MPF_F3094233896minus94.8339901866
mate-pair-formationNC_009837_00049MPF_F3389635110minus98.765990783
mate-pair-formationNC_010488_00021MPF_F3772339528minus99.16910001179
mate-pair-formationNC_018966_00040MPF_F3952840118minus100932.1800000000000003e-129408
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
Showing 1 to 10 of 18 entries


Detected typing markers by plasmidfinder
NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2
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NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2