Plasmid NZ_CP123594.1

Sequence

Nucleotide Information

Accession NZ_CP123594.1
Description Escherichia coli strain DJH_183sputum plasmid pDJH_Plas4, complete sequence
Source refseq
Topology circular
Length 4367 bp
GC Content 0.55 %
Created at NCBI Aug. 14, 2023



Assembly

Genome Data Information

Accession GCF_030708395.1
Assembly Coverage 417.68


Biosample

Curated Collection Information
Accession 34121641

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query China
Original Query Type name
Coordinates (Lat/Lon) 34.41/86.03
Address China

ECOSYSTEM
Original Query Homo sapiens,cell culture
Classification cell_culture,host_associated
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query None
DOID/SYMP

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

NZ_CP050781.1 See Comparison
NZ_CP063298.1 See Comparison
NZ_CP102741.1 See Comparison
NZ_CP104487.1 See Comparison
NZ_CP083733.1 See Comparison
CP088362.1 See Comparison
NZ_CP043038.1 See Comparison
NZ_CP104487.1 See Comparison
NZ_CP050781.1 See Comparison
NZ_CP032885.1 See Comparison
NZ_CP104635.1 See Comparison
NZ_CP063298.1 See Comparison
NZ_CP102741.1 See Comparison
CP088362.1 See Comparison
NZ_CP083733.1 See Comparison
NZ_CP102741.1 See Comparison
NZ_CP104635.1 See Comparison
NZ_CP050781.1 See Comparison
NZ_CP104487.1 See Comparison
NZ_CP043038.1 See Comparison
NZ_CP032885.1 See Comparison
NZ_CP063298.1 See Comparison
NZ_CP043038.1 See Comparison
CP088362.1 See Comparison
NZ_CP083733.1 See Comparison
NZ_CP032885.1 See Comparison
NZ_CP083733.1 See Comparison
NZ_CP063298.1 See Comparison
NZ_CP102741.1 See Comparison
NZ_CP104635.1 See Comparison
NZ_CP050781.1 See Comparison
NZ_CP104487.1 See Comparison
CP088362.1 See Comparison
NZ_CP043038.1 See Comparison
NZ_CP032885.1 See Comparison
NZ_CP063298.1 See Comparison
NZ_CP104635.1 See Comparison
NZ_CP050781.1 See Comparison
NZ_CP102741.1 See Comparison
NZ_CP104487.1 See Comparison
NZ_CP043038.1 See Comparison
CP088362.1 See Comparison
NZ_CP083733.1 See Comparison
NZ_CP032885.1 See Comparison
NZ_CP063298.1 See Comparison
NZ_CP050781.1 See Comparison
NZ_CP104635.1 See Comparison
NZ_CP102741.1 See Comparison
NZ_CP104487.1 See Comparison
CP088362.1 See Comparison
NZ_CP083733.1 See Comparison
NZ_CP043038.1 See Comparison
NZ_CP104635.1 See Comparison
NZ_CP032885.1 See Comparison
NZ_CP123594.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore