Plasmid NZ_CP083733.1

Sequence

Nucleotide Information

Accession NZ_CP083733.1
Description Salmonella sp. A29-2 plasmid pB, complete sequence
Source refseq
Topology circular
Length 4234 bp
GC Content 0.55 %
Created at NCBI Sept. 29, 2021



Assembly

Genome Data Information

Accession GCF_020150755.1
Assembly Coverage 249.64


Biosample

Curated Collection Information
Accession 21220878

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query China
Original Query Type name
Coordinates (Lat/Lon) 34.41/86.03
Address China

ECOSYSTEM
Original Query chicken,salmonella,market
Classification host_associated,foot,meat,symbiosis
Host-associated Taxon
  • Salmonella (590)
  • Gallus gallus (9031)

DISEASE
Original Query None
DOID/SYMP

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

CP088362.1 See Comparison
NZ_CP043038.1 See Comparison
NZ_CP032885.1 See Comparison
NZ_CP123594.1 See Comparison
NZ_CP104635.1 See Comparison
NZ_CP050781.1 See Comparison
NZ_CP032885.1 See Comparison
NZ_CP063298.1 See Comparison
NZ_CP102741.1 See Comparison
CP088362.1 See Comparison
NZ_CP043038.1 See Comparison
CP088362.1 See Comparison
NZ_CP123594.1 See Comparison
NZ_CP104635.1 See Comparison
NZ_CP050781.1 See Comparison
NZ_CP063298.1 See Comparison
NZ_CP102741.1 See Comparison
NZ_CP123594.1 See Comparison
NZ_CP043038.1 See Comparison
NZ_CP032885.1 See Comparison
NZ_CP050781.1 See Comparison
NZ_CP104635.1 See Comparison
NZ_CP043038.1 See Comparison
NZ_CP063298.1 See Comparison
NZ_CP102741.1 See Comparison
CP088362.1 See Comparison
NZ_CP123594.1 See Comparison
NZ_CP032885.1 See Comparison
NZ_CP032885.1 See Comparison
NZ_CP063298.1 See Comparison
NZ_CP102741.1 See Comparison
NZ_CP043038.1 See Comparison
NZ_CP104635.1 See Comparison
NZ_CP050781.1 See Comparison
CP088362.1 See Comparison
NZ_CP083733.1 See Comparison
NZ_CP102741.1 See Comparison
NZ_CP104635.1 See Comparison
NZ_CP063298.1 See Comparison
NZ_CP123594.1 See Comparison
NZ_CP050781.1 See Comparison
NZ_CP104635.1 See Comparison
NZ_CP043038.1 See Comparison
NZ_CP032885.1 See Comparison
NZ_CP123594.1 See Comparison
CP088362.1 See Comparison
NZ_CP063298.1 See Comparison
NZ_CP050781.1 See Comparison
NZ_CP102741.1 See Comparison
NZ_CP102741.1 See Comparison
NZ_CP043038.1 See Comparison
NZ_CP032885.1 See Comparison
NZ_CP104635.1 See Comparison
CP088362.1 See Comparison
NZ_CP123594.1 See Comparison
NZ_CP050781.1 See Comparison
NZ_CP063298.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore


Detected typing markers by plasmidfinder
NUCCORE ACC Typing Identity Coverage Start End Strand HSP length Template length Position in ref Positions in Contig Note Accession Hit id Organism L1 Organism L2
NUCCORE ACC Typing Identity Coverage Start End Strand HSP length Template length Position in ref Positions in Contig Note Accession Hit id Organism L1 Organism L2