Plasmid NZ_CP050781.1
Sequence
Nucleotide Information
| Accession | NZ_CP050781.1 |
|---|---|
| Description | Salmonella enterica subsp. enterica serovar Indiana strain SI85 plasmid pSI85-2, complete sequence |
| Source | refseq |
| Topology | circular |
| Length | 4234 bp |
| GC Content | 0.55 % |
| Created at NCBI | April 8, 2020 |
Host Taxonomy
According to NCBI Taxonomy
| Assigned Host | Salmonella enterica (286783) |
|---|
Lineage
| Superkingdom | Bacteria (2) |
|---|---|
| Phylum | Pseudomonadota (1224) |
| Class | Gammaproteobacteria (1236) |
| Order | Enterobacterales (91347) |
| Family | Enterobacteriaceae (543) |
| Genus | Salmonella (590) |
| Species | Salmonella_enterica (28901) |
| Strain |
Biosample
Curated Collection Information
| Accession | 14450152 |
|---|
PLASMID INFORMATION
GEOGRAPHICAL INFORMATION
| Original Query | 31.23N;121.47E |
|---|---|
| Original Query Type | coordinates |
| Coordinates (Lat/Lon) | 31.23/121.47 |
| Address | People's Square, 120, People's Avenue, Jiangyin, Nanjingdonglu Subdistrict, Shanghai, Huangpu District, Shanghai, 200001, China |
ECOSYSTEM
| Original Query | chicken,Chicken product |
|---|---|
| Classification | food,host_associated,meat |
| Host-associated Taxon |
|
DISEASE
| Original Query | None |
|---|---|
| DOID/SYMP |
Visualization
Plasmids from same Biosample
Similar Plasmids
based on Mash distance
Plasmid Visualization
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Annotations
based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
| NUCCORE ACC | Gene | Locus Tag | Product | Protein id | Codon Start | Translation Table | GO process |
|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Gene | Locus Tag | Product | Protein id | Codon Start | Translation Table | GO process |
Typing
based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
| NUCCORE ACC | Replicon Type | Relaxase Type | MPF Type | OriT Type | Predicted Mobility | Primary Cluster ID | Secondary Cluster ID | Observed Host Range Ncbi Name | Mash Neighbor Distance | Reported Host Range Lit Rank |
|---|---|---|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Replicon Type | Relaxase Type | MPF Type | OriT Type | Predicted Mobility | Primary Cluster ID | Secondary Cluster ID | Observed Host Range Ncbi Name | Mash Neighbor Distance | Reported Host Range Lit Rank |
BLAST results of detected typing markers by MOB-type
| biomarker | MOB-suite ID | Element | Start | End | Strand | Identity | Coverage | Evalue | Bitscore |
|---|---|---|---|---|---|---|---|---|---|
| oriT | CP016748 | MOBQ | 2568 | 2742 | minus | 96 | 98 | 1.23e-74 | 285 |
| oriT | DQ318958 | MOBQ | 2742 | 3101 | minus | 100 | 100 | 0 | 665 |
| replicon | CP019693_00001 | Col156 | 1175 | 1903 | plus | 94.376 | 96 | 0 | 1120 |
| relaxase | NZ_AWFJ01000122_00007 | MOBQ | 3 | 725 | plus | 89.627 | 99 | 1.14e-141 | 456 |
| relaxase | NZ_AWFJ01000122_00007 | MOBQ | 2743 | 4233 | plus | 94.97 | 99 | 0 | 910 |
| biomarker | MOB-suite ID | Element | Start | End | Strand | Identity | Coverage | Evalue | Bitscore |
Showing 1 to 5 of 5 entries
Detected typing markers by plasmidfinder
| NUCCORE ACC | Typing | Identity | Coverage | Start | End | Strand | Organism L1 | Organism L2 |
|---|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Typing | Identity | Coverage | Start | End | Strand | Organism L1 | Organism L2 |