Plasmid CP054322.1

Sequence

Nucleotide Information

Accession CP054322.1
Description Escherichia coli strain SCU-390 plasmid pSCU-390-3, complete sequence
Source insd
Topology circular
Length 5164 bp
GC Content 0.47 %
Created at NCBI June 10, 2020



Assembly

Genome Data Information

Accession GCA_013315875.1
Assembly Coverage 13


Biosample

Curated Collection Information
Accession 14609796

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query USA,California
Original Query Type name
Coordinates (Lat/Lon) 36.70/-118.76
Address USA,California

ECOSYSTEM
Original Query Homo sapiens,whole organism,rectal swab from healthy college student
Classification gastrointestinal_system,host_associated,rectal
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query None
DOID/SYMP

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

NZ_CP055082.1 See Comparison
NZ_CP023837.1 See Comparison
NZ_CP048314.1 See Comparison
NZ_CP115332.1 See Comparison
NZ_CP123235.1 See Comparison
NZ_CP151353.1 See Comparison
NZ_CP151305.1 See Comparison
NZ_CP151339.1 See Comparison
NZ_CP151377.1 See Comparison
NZ_CP123235.1 See Comparison
NZ_AP022209.1 See Comparison
NZ_CP055082.1 See Comparison
NZ_CP023837.1 See Comparison
NZ_CP115332.1 See Comparison
NZ_CP151353.1 See Comparison
NZ_CP048314.1 See Comparison
NZ_CP151305.1 See Comparison
NZ_CP151339.1 See Comparison
NZ_CP151377.1 See Comparison
NZ_CP055082.1 See Comparison
NZ_AP022209.1 See Comparison
NZ_CP123235.1 See Comparison
NZ_CP023837.1 See Comparison
NZ_CP115332.1 See Comparison
NZ_CP151353.1 See Comparison
NZ_CP151305.1 See Comparison
NZ_CP151339.1 See Comparison
NZ_CP151377.1 See Comparison
NZ_CP023837.1 See Comparison
NZ_CP048314.1 See Comparison
NZ_CP055082.1 See Comparison
NZ_AP022209.1 See Comparison
NZ_CP115332.1 See Comparison
NZ_CP151339.1 See Comparison
NZ_CP123235.1 See Comparison
NZ_CP151377.1 See Comparison
NZ_CP055082.1 See Comparison
NZ_CP151353.1 See Comparison
NZ_CP151305.1 See Comparison
NZ_CP048314.1 See Comparison
NZ_AP022209.1 See Comparison
NZ_CP151353.1 See Comparison
NZ_CP023837.1 See Comparison
NZ_CP115332.1 See Comparison
NZ_CP123235.1 See Comparison
NZ_CP151305.1 See Comparison
NZ_CP151339.1 See Comparison
NZ_CP151377.1 See Comparison
NZ_CP115332.1 See Comparison
CP054322.1 See Comparison
NZ_AP022209.1 See Comparison
NZ_CP055082.1 See Comparison
NZ_CP048314.1 See Comparison
NZ_CP023837.1 See Comparison
NZ_AP022209.1 See Comparison
NZ_CP123235.1 See Comparison
NZ_CP151353.1 See Comparison
NZ_CP151305.1 See Comparison
NZ_CP151339.1 See Comparison
NZ_CP151377.1 See Comparison
NZ_CP048314.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore