Plasmid NZ_CP123033.1

Sequence

Nucleotide Information

Accession NZ_CP123033.1
Description Escherichia coli strain 20-20 plasmid p20-20P4, complete sequence
Source refseq
Topology circular
Length 3376 bp
GC Content 0.55 %
Created at NCBI April 24, 2023



Assembly

Genome Data Information

Accession GCF_029854535.1
Assembly Coverage 10


Biosample

Curated Collection Information
Accession 34164680

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query China,Jiangsu
Original Query Type name
Coordinates (Lat/Lon) 33.00/120.00
Address China,Jiangsu

ECOSYSTEM
Original Query Homo sapiens,single cell,Bronchoalveolar Lavage Fluid
Classification bronchi,cell_culture,host_associated,respiratory_system
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query None
DOID/SYMP

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

NZ_CP039602.1 See Comparison
NZ_OY754454.1 See Comparison
NZ_CP135678.1 See Comparison
NZ_CP126772.1 See Comparison
NZ_CP134375.1 See Comparison
NZ_CP107170.1 See Comparison
NZ_CP104625.1 See Comparison
NZ_CP123038.1 See Comparison
NZ_CP123015.1 See Comparison
NZ_CP123021.1 See Comparison
NZ_CP147080.1 See Comparison
NZ_CP149225.1 See Comparison
NZ_CP103485.1 See Comparison
NZ_CP070928.1 See Comparison
NZ_CP048317.1 See Comparison
NZ_CP049129.1 See Comparison
NZ_CP054385.1 See Comparison
NZ_CP100539.1 See Comparison
NZ_CP039602.1 See Comparison
NZ_CP134375.1 See Comparison
NZ_CP135678.1 See Comparison
NZ_OY754454.1 See Comparison
NZ_CP126772.1 See Comparison
NZ_CP104625.1 See Comparison
NZ_CP107170.1 See Comparison
NZ_CP048317.1 See Comparison
NZ_CP149225.1 See Comparison
NZ_CP123038.1 See Comparison
NZ_CP123015.1 See Comparison
NZ_CP123021.1 See Comparison
NZ_CP147080.1 See Comparison
NZ_CP103485.1 See Comparison
NZ_CP070928.1 See Comparison
NZ_CP049129.1 See Comparison
NZ_CP054385.1 See Comparison
NZ_CP100539.1 See Comparison
NZ_CP135678.1 See Comparison
NZ_CP039602.1 See Comparison
NZ_OY754454.1 See Comparison
NZ_CP134375.1 See Comparison
NZ_CP126772.1 See Comparison
NZ_CP123038.1 See Comparison
NZ_CP107170.1 See Comparison
NZ_CP104625.1 See Comparison
NZ_CP123021.1 See Comparison
NZ_CP123015.1 See Comparison
NZ_CP149225.1 See Comparison
NZ_CP147080.1 See Comparison
NZ_CP070928.1 See Comparison
NZ_CP048317.1 See Comparison
NZ_CP049129.1 See Comparison
NZ_CP103485.1 See Comparison
NZ_CP054385.1 See Comparison
NZ_CP100539.1 See Comparison
NZ_CP104625.1 See Comparison
NZ_CP039602.1 See Comparison
NZ_OY754454.1 See Comparison
NZ_CP134375.1 See Comparison
NZ_CP135678.1 See Comparison
NZ_CP126772.1 See Comparison
NZ_CP107170.1 See Comparison
NZ_CP123021.1 See Comparison
NZ_CP048317.1 See Comparison
NZ_CP123038.1 See Comparison
NZ_CP123015.1 See Comparison
NZ_CP147080.1 See Comparison
NZ_CP149225.1 See Comparison
NZ_CP135678.1 See Comparison
NZ_CP070928.1 See Comparison
NZ_CP049129.1 See Comparison
NZ_CP039602.1 See Comparison
NZ_CP054385.1 See Comparison
NZ_CP103485.1 See Comparison
NZ_CP100539.1 See Comparison
NZ_OY754454.1 See Comparison
NZ_CP134375.1 See Comparison
NZ_CP126772.1 See Comparison
NZ_CP123038.1 See Comparison
NZ_CP107170.1 See Comparison
NZ_CP104625.1 See Comparison
NZ_CP123015.1 See Comparison
NZ_CP123021.1 See Comparison
NZ_CP147080.1 See Comparison
NZ_CP149225.1 See Comparison
NZ_CP048317.1 See Comparison
NZ_CP103485.1 See Comparison
NZ_CP049129.1 See Comparison
NZ_CP070928.1 See Comparison
NZ_CP054385.1 See Comparison
NZ_CP039602.1 See Comparison
NZ_CP100539.1 See Comparison
NZ_OY754454.1 See Comparison
NZ_CP149225.1 See Comparison
NZ_CP126772.1 See Comparison
NZ_CP134375.1 See Comparison
NZ_CP107170.1 See Comparison
NZ_CP104625.1 See Comparison
NZ_CP123038.1 See Comparison
NZ_CP123033.1 See Comparison
NZ_CP123015.1 See Comparison
NZ_CP123021.1 See Comparison
NZ_CP147080.1 See Comparison
NZ_CP135678.1 See Comparison
NZ_CP048317.1 See Comparison
NZ_CP049129.1 See Comparison
NZ_CP070928.1 See Comparison
NZ_CP054385.1 See Comparison
NZ_CP100539.1 See Comparison
NZ_CP103485.1 See Comparison


Identical Plasmids

100% Sequence Identity


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore