Plasmid NZ_CP103485.1

Sequence

Nucleotide Information

Accession NZ_CP103485.1
Description Escherichia coli strain 4621 plasmid pMB9635_6, complete sequence
Source refseq
Topology circular
Length 3373 bp
GC Content 0.55 %
Created at NCBI Sept. 6, 2022



Assembly

Genome Data Information

Accession GCF_024917715.1
Assembly Coverage 345


Biosample

Curated Collection Information
Accession 28174065

PLASMID INFORMATION
Genotype ST68

GEOGRAPHICAL INFORMATION
Original Query 29.7068N;95.3971W
Original Query Type coordinates
Coordinates (Lat/Lon) 29.71/-95.40
Address University of Texas MD Anderson Cancer Center, 1515, Holcombe Boulevard, Texas Medical Center, Houston, Harris County, Texas, 77030, United States

ECOSYSTEM
Original Query Homo sapiens,blood
Classification blood,circulatory_system,host_associated
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query Bacteremia
DOID/SYMP
  • Bacterial infectious disease (DOID:104 )
    • A disease by infectious agent that results_in infection, has_material_basis_in Bacteria.
    • Has_material_basis_in: ['bacteria']

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

NZ_CP103532.1 See Comparison
NZ_CP039602.1 See Comparison
NZ_CP134375.1 See Comparison
NZ_CP107170.1 See Comparison
NZ_CP104625.1 See Comparison
NZ_CP123038.1 See Comparison
NZ_CP123033.1 See Comparison
NZ_CP123015.1 See Comparison
NZ_CP123021.1 See Comparison
NZ_CP070928.1 See Comparison
NZ_OY754454.1 See Comparison
NZ_CP135678.1 See Comparison
NZ_CP147080.1 See Comparison
NZ_CP048317.1 See Comparison
NZ_CP049129.1 See Comparison
NZ_OY754454.1 See Comparison
NZ_CP039602.1 See Comparison
NZ_CP135678.1 See Comparison
NZ_CP134375.1 See Comparison
NZ_CP107170.1 See Comparison
NZ_CP147080.1 See Comparison
NZ_CP123038.1 See Comparison
NZ_CP123033.1 See Comparison
NZ_CP123015.1 See Comparison
NZ_CP123021.1 See Comparison
NZ_CP104625.1 See Comparison
NZ_CP048317.1 See Comparison
NZ_CP070928.1 See Comparison
NZ_CP107170.1 See Comparison
NZ_CP049129.1 See Comparison
NZ_CP103532.1 See Comparison
NZ_CP103485.1 See Comparison
NZ_CP039602.1 See Comparison
NZ_CP134375.1 See Comparison
NZ_OY754454.1 See Comparison
NZ_CP135678.1 See Comparison
NZ_CP070928.1 See Comparison
NZ_CP104625.1 See Comparison
NZ_CP147080.1 See Comparison
NZ_CP123038.1 See Comparison
NZ_CP123033.1 See Comparison
NZ_CP123015.1 See Comparison
NZ_CP123021.1 See Comparison
NZ_CP048317.1 See Comparison
NZ_CP103532.1 See Comparison
NZ_CP049129.1 See Comparison
NZ_CP039602.1 See Comparison
NZ_CP107170.1 See Comparison
NZ_OY754454.1 See Comparison
NZ_CP135678.1 See Comparison
NZ_CP134375.1 See Comparison
NZ_CP070928.1 See Comparison
NZ_CP048317.1 See Comparison
NZ_CP104625.1 See Comparison
NZ_CP123038.1 See Comparison
NZ_CP123033.1 See Comparison
NZ_CP123015.1 See Comparison
NZ_CP123021.1 See Comparison
NZ_CP147080.1 See Comparison
NZ_OY754454.1 See Comparison
NZ_CP049129.1 See Comparison
NZ_CP103532.1 See Comparison
NZ_CP039602.1 See Comparison
NZ_CP135678.1 See Comparison
NZ_CP123038.1 See Comparison
NZ_CP134375.1 See Comparison
NZ_CP104625.1 See Comparison
NZ_CP107170.1 See Comparison
NZ_CP123033.1 See Comparison
NZ_CP123015.1 See Comparison
NZ_CP123021.1 See Comparison
NZ_CP103532.1 See Comparison
NZ_CP147080.1 See Comparison
NZ_CP070928.1 See Comparison
NZ_CP049129.1 See Comparison
NZ_CP048317.1 See Comparison
NZ_OY754454.1 See Comparison
NZ_CP039602.1 See Comparison
NZ_CP135678.1 See Comparison
NZ_CP147080.1 See Comparison
NZ_CP104625.1 See Comparison
NZ_CP123038.1 See Comparison
NZ_CP123033.1 See Comparison
NZ_CP123015.1 See Comparison
NZ_CP123021.1 See Comparison
NZ_CP134375.1 See Comparison
NZ_CP107170.1 See Comparison
NZ_CP048317.1 See Comparison
NZ_CP070928.1 See Comparison
NZ_CP049129.1 See Comparison
NZ_CP039602.1 See Comparison
NZ_CP103532.1 See Comparison
NZ_CP135678.1 See Comparison
NZ_OY754454.1 See Comparison
NZ_CP107170.1 See Comparison
NZ_CP134375.1 See Comparison
NZ_CP104625.1 See Comparison
NZ_CP123038.1 See Comparison
NZ_CP123021.1 See Comparison
NZ_CP123033.1 See Comparison
NZ_CP123015.1 See Comparison
NZ_CP147080.1 See Comparison
NZ_CP048317.1 See Comparison
NZ_CP049129.1 See Comparison
NZ_CP103532.1 See Comparison
NZ_CP070928.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore


Detected typing markers by plasmidfinder
NUCCORE ACC Typing Identity Coverage Start End Strand HSP length Template length Position in ref Positions in Contig Note Accession Hit id Organism L1 Organism L2
NUCCORE ACC Typing Identity Coverage Start End Strand HSP length Template length Position in ref Positions in Contig Note Accession Hit id Organism L1 Organism L2