Plasmid NZ_CP070928.1

Sequence

Nucleotide Information

Accession	NZ_CP070928.1
Description	Escherichia coli strain 40EC plasmid p40EC-8
Source	refseq
Topology	linear
Length	3375 bp
GC Content	0.55 %
Created at NCBI	March 5, 2021

Host Taxonomy

According to NCBI Taxonomy

Assigned Host	Escherichia coli (562)

Lineage

Superkingdom	Bacteria (2)
Phylum	Pseudomonadota (1224)
Class	Gammaproteobacteria (1236)
Order	Enterobacterales (91347)
Family	Enterobacteriaceae (543)
Genus	Escherichia (561)
Species	Escherichia_coli (562)
Strain

Assembly

Genome Data Information

Accession	GCF_017088445.1
Assembly Coverage	378

Biosample

Curated Collection Information

Accession	17807534

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION

Original Query	Singapore
Original Query Type	name
Coordinates (Lat/Lon)	1.34/103.88
Address	Singapore

ECOSYSTEM

Original Query	Homo sapiens,Bacterial pure culture,feces
Classification	cell_culture,fecal,gastrointestinal_system,host_associated
Host-associated Taxon	Homo sapiens (9606)

DISEASE

Original Query	None
DOID/SYMP

Visualization

Plasmids from same Biosample

Similar Plasmids

based on Mash distance

NZ_CP039602.1	See Comparison
NZ_CP149225.1	See Comparison
NZ_CP135678.1	See Comparison
NZ_CP107170.1	See Comparison
NZ_CP123021.1	See Comparison
NZ_CP147080.1	See Comparison
NZ_OY754454.1	See Comparison
NZ_CP134375.1	See Comparison
NZ_CP123038.1	See Comparison
NZ_CP123033.1	See Comparison
NZ_CP123015.1	See Comparison
NZ_CP048317.1	See Comparison
NZ_OY754454.1	See Comparison
NZ_CP103485.1	See Comparison
NZ_CP100539.1	See Comparison
NZ_CP039602.1	See Comparison
NZ_CP049129.1	See Comparison
NZ_CP134375.1	See Comparison
NZ_CP135678.1	See Comparison
NZ_CP107170.1	See Comparison
NZ_CP049129.1	See Comparison
NZ_CP048317.1	See Comparison
NZ_CP049129.1	See Comparison
NZ_CP100539.1	See Comparison
NZ_OY754454.1	See Comparison
NZ_CP135678.1	See Comparison
NZ_CP134375.1	See Comparison
NZ_CP048317.1	See Comparison
NZ_CP123038.1	See Comparison
NZ_CP123033.1	See Comparison
NZ_CP123015.1	See Comparison
NZ_CP123021.1	See Comparison
NZ_CP147080.1	See Comparison
NZ_CP149225.1	See Comparison
NZ_CP103485.1	See Comparison
NZ_CP039602.1	See Comparison
NZ_CP107170.1	See Comparison
NZ_CP123038.1	See Comparison
NZ_CP123033.1	See Comparison
NZ_CP123015.1	See Comparison
NZ_CP123021.1	See Comparison
NZ_CP147080.1	See Comparison
NZ_CP149225.1	See Comparison
NZ_CP123038.1	See Comparison
NZ_OY754454.1	See Comparison
NZ_CP135678.1	See Comparison
NZ_CP134375.1	See Comparison
NZ_CP103485.1	See Comparison
NZ_CP100539.1	See Comparison
NZ_CP039602.1	See Comparison
NZ_CP107170.1	See Comparison
NZ_CP123033.1	See Comparison
NZ_CP123015.1	See Comparison
NZ_CP123021.1	See Comparison
NZ_CP149225.1	See Comparison
NZ_CP147080.1	See Comparison
NZ_CP049129.1	See Comparison
NZ_CP048317.1	See Comparison
NZ_CP070928.1	See Comparison
NZ_CP100539.1	See Comparison
NZ_CP103485.1	See Comparison
NZ_CP039602.1	See Comparison
NZ_CP147080.1	See Comparison
NZ_OY754454.1	See Comparison
NZ_CP135678.1	See Comparison
NZ_CP134375.1	See Comparison
NZ_CP107170.1	See Comparison
NZ_CP123038.1	See Comparison
NZ_CP123033.1	See Comparison
NZ_CP123015.1	See Comparison
NZ_CP123021.1	See Comparison
NZ_CP048317.1	See Comparison
NZ_CP149225.1	See Comparison
NZ_CP049129.1	See Comparison
NZ_OY754454.1	See Comparison
NZ_CP103485.1	See Comparison
NZ_CP100539.1	See Comparison
NZ_CP039602.1	See Comparison
NZ_CP135678.1	See Comparison
NZ_CP134375.1	See Comparison
NZ_CP123038.1	See Comparison
NZ_CP107170.1	See Comparison
NZ_CP123033.1	See Comparison
NZ_CP123015.1	See Comparison
NZ_CP123021.1	See Comparison
NZ_CP147080.1	See Comparison
NZ_CP048317.1	See Comparison
NZ_CP149225.1	See Comparison
NZ_CP049129.1	See Comparison
NZ_CP100539.1	See Comparison
NZ_CP103485.1	See Comparison

Plasmid Visualization

NUCCORE ACC	Source	Element Name	Display	Sequence	Favorite
NUCCORE ACC	Source	Element Name	Display	Sequence	Favorite

Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)

NUCCORE ACC	Gene	Locus Tag	Product	Protein id	Codon Start	Translation Table	GO process
NUCCORE ACC	Gene	Locus Tag	Product	Protein id	Codon Start	Translation Table	GO process

Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)

NUCCORE ACC	Contigs	md5 hash	Replicon Type	Relaxase Type	MPF Type	OriT Type	Predicted Mobility	Primary Cluster ID	Secondary Cluster ID	Observed Host Range Ncbi Rank	Observed Host Range Ncbi Name	Mash Nearest Neighbor	Mash Neighbor Distance	Mash Neighbor Identification	Reported Host Range Lit Rank	Reported Host Range Lit Name	Replicon Type Accession	Relaxase Type Accession	MPF Type Accession	OriT Type Accession	Associated PMID(s)
NUCCORE ACC	Contigs	md5 hash	Replicon Type	Relaxase Type	MPF Type	OriT Type	Predicted Mobility	Primary Cluster ID	Secondary Cluster ID	Observed Host Range Ncbi Rank	Observed Host Range Ncbi Name	Mash Nearest Neighbor	Mash Neighbor Distance	Mash Neighbor Identification	Reported Host Range Lit Rank	Reported Host Range Lit Name	Replicon Type Accession	Relaxase Type Accession	MPF Type Accession	OriT Type Accession	Associated PMID(s)

BLAST results of detected typing markers by MOB-type

NUCCORE ACC	biomarker	MOB-suite ID	Element	Start	End	Strand	Identity	Coverage	Evalue	Bitscore
NUCCORE ACC	biomarker	MOB-suite ID	Element	Start	End	Strand	Identity	Coverage	Evalue	Bitscore