Plasmid NZ_CP122861.1

Sequence

Nucleotide Information

Accession NZ_CP122861.1
Description Escherichia coli strain ETEC1720 plasmid unnamed2, complete sequence
Source refseq
Topology circular
Length 5430 bp
GC Content 0.51 %
Created at NCBI May 17, 2023



Assembly

Genome Data Information

Accession GCF_030013865.1
Assembly Coverage 376


Biosample

Curated Collection Information
Accession 32549599

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query Belgium
Original Query Type name
Coordinates (Lat/Lon) 50.64/4.67
Address Belgium

ECOSYSTEM
Original Query Sus scrofa,feces
Classification fecal,gastrointestinal_system,host_associated
Host-associated Taxon

DISEASE
Original Query enteric colibacillosis
DOID/SYMP
  • Bacterial infectious disease (DOID:104 )
    • A disease by infectious agent that results_in infection, has_material_basis_in Bacteria.
    • Has_material_basis_in: ['bacteria']

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

NZ_CP091562.1 See Comparison
NZ_CP054982.1 See Comparison
NZ_CP085701.1 See Comparison
NZ_OY754391.1 See Comparison
NZ_CP033764.1 See Comparison
NZ_OY754419.1 See Comparison
NZ_OQ401025.1 See Comparison
NZ_CP122850.1 See Comparison
NZ_AP022485.1 See Comparison
NZ_CP091562.1 See Comparison
NZ_CP122850.1 See Comparison
NZ_CP054982.1 See Comparison
NZ_CP033764.1 See Comparison
NZ_OY754391.1 See Comparison
NZ_OY754419.1 See Comparison
NZ_CP085701.1 See Comparison
NZ_OQ401025.1 See Comparison
NZ_CP091562.1 See Comparison
NZ_AP022485.1 See Comparison
NZ_CP085701.1 See Comparison
NZ_CP054982.1 See Comparison
NZ_CP122850.1 See Comparison
NZ_CP033764.1 See Comparison
NZ_OY754391.1 See Comparison
NZ_OY754419.1 See Comparison
NZ_OQ401025.1 See Comparison
NZ_CP091562.1 See Comparison
NZ_AP022485.1 See Comparison
NZ_CP085701.1 See Comparison
NZ_CP054982.1 See Comparison
NZ_CP033764.1 See Comparison
NZ_OY754391.1 See Comparison
NZ_OY754419.1 See Comparison
NZ_OQ401025.1 See Comparison
NZ_CP122861.1 See Comparison
NZ_CP122850.1 See Comparison
NZ_CP085701.1 See Comparison
NZ_AP022485.1 See Comparison
NZ_CP091562.1 See Comparison
NZ_CP054982.1 See Comparison
NZ_CP033764.1 See Comparison
NZ_OY754391.1 See Comparison
NZ_OY754419.1 See Comparison
NZ_CP122850.1 See Comparison
NZ_AP022485.1 See Comparison
NZ_OQ401025.1 See Comparison
NZ_OY754391.1 See Comparison
NZ_CP091562.1 See Comparison
NZ_CP054982.1 See Comparison
NZ_CP033764.1 See Comparison
NZ_CP085701.1 See Comparison
NZ_OY754419.1 See Comparison
NZ_OQ401025.1 See Comparison
NZ_CP122850.1 See Comparison
NZ_AP022485.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore