Plasmid NZ_CP122866.1

Sequence

Nucleotide Information

Accession NZ_CP122866.1
Description Escherichia coli strain ETEC1720 plasmid unnamed7, complete sequence
Source refseq
Topology circular
Length 105313 bp
GC Content 0.51 %
Created at NCBI May 17, 2023



Assembly

Genome Data Information

Accession GCF_030013865.1
Assembly Coverage 376


Biosample

Curated Collection Information
Accession 32549599

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query Belgium
Original Query Type name
Coordinates (Lat/Lon) 50.64/4.67
Address Belgium

ECOSYSTEM
Original Query Sus scrofa,feces
Classification fecal,gastrointestinal_system,host_associated
Host-associated Taxon

DISEASE
Original Query enteric colibacillosis
DOID/SYMP
  • Bacterial infectious disease (DOID:104 )
    • A disease by infectious agent that results_in infection, has_material_basis_in Bacteria.
    • Has_material_basis_in: ['bacteria']

Visualization

PNG JSON

Plasmids from same Biosample




Plasmid Visualization

JSON GENBANK

SourceElement Name Display Sequence Favorite
amrfinderplustet(A)copy
amrfinderplussul2copy
amrfinderplusaph(6)-Idcopy
amrfinderplusaac(3)-IVacopy
amrfinderplusaph(3'')-Ibcopy
amrfinderplusblaTEM-52copy
amrfinderplusaph(4)-Iacopy
PGAGnikBcopy
PGAGtrbCcopy
PGAGtrbBcopy
SourceElement NameDisplaySequenceFavorite
Showing 1 to 10 of 122 entries
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Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process
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NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD
NUCCORE ACCAnalysis Software NameReference Database VersionGene SymbolGene NameDrug ClassAntimicrobial AgentGene StartGene StopGene LengthStrand OrientationSequence Identity (%)Coverage (%)
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NUCCORE ACCAnalysis Software NameReference Database VersionGene SymbolGene NameDrug ClassAntimicrobial AgentGene StartGene StopGene LengthStrand OrientationSequence Identity (%)Coverage (%)



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACCReplicon TypeRelaxase TypeMPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank
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NUCCORE ACCReplicon TypeRelaxase TypeMPF TypeOriT TypePredicted MobilityPrimary Cluster IDSecondary Cluster IDObserved Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank




BLAST results of detected typing markers by MOB-type
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
oriTHM021326MOBP104852104944minus1001004.37e-41172
relaxaseNC_019097MOBP12694plus95.2129901685
repliconKJ484639IncI-gamma/K15510556136plus99.80610001895
mate-pair-formationNC_019097_00056MPF_I27665027minus98.8069201446
mate-pair-formationNC_022267_00057MPF_I1518516384minus97.751000757
mate-pair-formationNC_019111_00038MPF_I2116221539minus98.413941.82e-45164
mate-pair-formationNC_023290_00086MPF_I2159322117minus98.8571005.21e-100322
mate-pair-formationNC_015965_00072MPF_I2212022821minus99.5731004.56e-153477
mate-pair-formationNC_019097_00075MPF_I2411625096minus1001000658
mate-pair-formationNC_022267_00069MPF_I2515225799minus98.611913.45e-142446
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
Showing 1 to 10 of 12 entries


Detected typing markers by plasmidfinder
NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2
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NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2