Plasmid NZ_CP117308.1

Sequence

Nucleotide Information

Accession NZ_CP117308.1
Description Salmonella enterica subsp. enterica serovar Derby strain RM004 plasmid pRM004_1, complete sequence
Source refseq
Topology circular
Length 6988 bp
GC Content 0.48 %
Created at NCBI March 3, 2023



Assembly

Genome Data Information

Accession GCF_028892975.1
Assembly Coverage 539


Biosample

Curated Collection Information
Accession 32950809

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query USA,midwestern
Original Query Type name
Coordinates (Lat/Lon) 33.87/-98.52
Address USA,midwestern

ECOSYSTEM
Original Query Bos taurus,Manila ropes placed above water tanks and feed bunks used as sampling devices
Classification anthropogenic,host_associated
Host-associated Taxon

DISEASE
Original Query None
DOID/SYMP

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

CP057719.1 See Comparison
CP057709.1 See Comparison
CP055727.1 See Comparison
NZ_CP047384.1 See Comparison
NZ_CP120553.1 See Comparison
NZ_CP117302.1 See Comparison
NZ_CP117319.1 See Comparison
NZ_CP117313.1 See Comparison
NZ_CP101214.1 See Comparison
NZ_CP129347.1 See Comparison
NZ_CP082064.1 See Comparison
CP055727.1 See Comparison
CP057719.1 See Comparison
CP057709.1 See Comparison
CP055727.1 See Comparison
NZ_CP047384.1 See Comparison
NZ_CP120553.1 See Comparison
NZ_CP082064.1 See Comparison
NZ_CP129347.1 See Comparison
CP057719.1 See Comparison
CP057709.1 See Comparison
NZ_CP117302.1 See Comparison
NZ_CP117319.1 See Comparison
NZ_CP117313.1 See Comparison
NZ_CP101214.1 See Comparison
NZ_CP120553.1 See Comparison
NZ_CP047384.1 See Comparison
NZ_CP129347.1 See Comparison
CP055727.1 See Comparison
NZ_CP120553.1 See Comparison
NZ_CP117302.1 See Comparison
NZ_CP117308.1 See Comparison
NZ_CP117319.1 See Comparison
NZ_CP117313.1 See Comparison
NZ_CP101214.1 See Comparison
NZ_CP082064.1 See Comparison
CP057719.1 See Comparison
CP057709.1 See Comparison
NZ_CP047384.1 See Comparison
NZ_CP101214.1 See Comparison
NZ_CP117302.1 See Comparison
NZ_CP117319.1 See Comparison
NZ_CP117313.1 See Comparison
NZ_CP129347.1 See Comparison
NZ_CP082064.1 See Comparison
NZ_CP120553.1 See Comparison
CP055727.1 See Comparison
NZ_CP047384.1 See Comparison
CP057719.1 See Comparison
CP057709.1 See Comparison
NZ_CP082064.1 See Comparison
NZ_CP101214.1 See Comparison
NZ_CP117302.1 See Comparison
NZ_CP117319.1 See Comparison
NZ_CP117313.1 See Comparison
CP055727.1 See Comparison
NZ_CP129347.1 See Comparison
CP057719.1 See Comparison
CP057709.1 See Comparison
NZ_CP101214.1 See Comparison
NZ_CP120553.1 See Comparison
NZ_CP117302.1 See Comparison
NZ_CP117319.1 See Comparison
NZ_CP117313.1 See Comparison
NZ_CP047384.1 See Comparison
NZ_CP082064.1 See Comparison
NZ_CP129347.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore