Plasmid CP057709.1

Sequence

Nucleotide Information

Accession CP057709.1
Description Escherichia coli strain RHB17-C03 plasmid pRHB17-C03_5, complete sequence
Source insd
Topology circular
Length 6988 bp
GC Content 0.48 %
Created at NCBI July 29, 2020



Assembly

Genome Data Information

Accession GCA_013895235.1
Assembly Coverage 76.2135


Biosample

Curated Collection Information
Accession 15148143

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query United Kingdom
Original Query Type name
Coordinates (Lat/Lon) 54.70/-3.28
Address United Kingdom

ECOSYSTEM
Original Query culture,Pooled pig faecal samples collected from floor of farm
Classification cell_culture,fecal,gastrointestinal_system,host_associated
Host-associated Taxon

DISEASE
Original Query None
DOID/SYMP

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

NZ_CP129347.1 See Comparison
CP057719.1 See Comparison
CP055727.1 See Comparison
NZ_CP117302.1 See Comparison
NZ_CP047384.1 See Comparison
NZ_CP120553.1 See Comparison
NZ_CP117308.1 See Comparison
NZ_CP117319.1 See Comparison
NZ_CP117313.1 See Comparison
NZ_CP101214.1 See Comparison
NZ_CP120553.1 See Comparison
CP055727.1 See Comparison
NZ_CP047384.1 See Comparison
NZ_CP129347.1 See Comparison
CP057719.1 See Comparison
NZ_CP129347.1 See Comparison
NZ_CP117302.1 See Comparison
NZ_CP117308.1 See Comparison
NZ_CP117319.1 See Comparison
NZ_CP117313.1 See Comparison
NZ_CP101214.1 See Comparison
CP055727.1 See Comparison
CP057719.1 See Comparison
CP057709.1 See Comparison
NZ_CP047384.1 See Comparison
NZ_CP101214.1 See Comparison
NZ_CP120553.1 See Comparison
NZ_CP117302.1 See Comparison
NZ_CP117308.1 See Comparison
NZ_CP117319.1 See Comparison
NZ_CP117313.1 See Comparison
NZ_CP117302.1 See Comparison
NZ_CP129347.1 See Comparison
CP055727.1 See Comparison
NZ_CP047384.1 See Comparison
CP057719.1 See Comparison
NZ_CP120553.1 See Comparison
NZ_CP117308.1 See Comparison
NZ_CP117319.1 See Comparison
NZ_CP117313.1 See Comparison
NZ_CP129347.1 See Comparison
NZ_CP101214.1 See Comparison
NZ_CP047384.1 See Comparison
CP055727.1 See Comparison
CP057719.1 See Comparison
NZ_CP117302.1 See Comparison
NZ_CP120553.1 See Comparison
NZ_CP117308.1 See Comparison
NZ_CP117319.1 See Comparison
NZ_CP117313.1 See Comparison
NZ_CP101214.1 See Comparison
CP055727.1 See Comparison
NZ_CP129347.1 See Comparison
CP057719.1 See Comparison
NZ_CP047384.1 See Comparison
NZ_CP120553.1 See Comparison
NZ_CP117302.1 See Comparison
NZ_CP117308.1 See Comparison
NZ_CP117319.1 See Comparison
NZ_CP117313.1 See Comparison
NZ_CP101214.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore