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v. 2024_05_31_v2
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Typing
Plasmid NZ_CP117311.1
Sequence
Nucleotide Information
Accession
NZ_CP117311.1
Description
Salmonella enterica subsp. enterica serovar Derby strain RM004 plasmid pRM004_4, complete sequence
Source
refseq
Topology
circular
Length
1316 bp
GC Content
0.51 %
Created at NCBI
March 3, 2023
Host Taxonomy
According to NCBI Taxonomy
Assigned Host
Salmonella enterica (28144)
Lineage
Superkingdom
Bacteria (2)
Phylum
Pseudomonadota (1224)
Class
Gammaproteobacteria (1236)
Order
Enterobacterales (91347)
Family
Enterobacteriaceae (543)
Genus
Salmonella (590)
Species
Salmonella_enterica (28901)
Strain
Assembly
Genome Data Information
Accession
GCF_028892975.1
Assembly Coverage
539
Biosample
Curated Collection Information
Accession
32950809
PLASMID INFORMATION
GEOGRAPHICAL INFORMATION
Original Query
USA,midwestern
Original Query Type
name
Coordinates (Lat/Lon)
33.87/-98.52
Address
USA,midwestern
ECOSYSTEM
Original Query
Bos taurus,Manila ropes placed above water tanks and feed bunks used as sampling devices
Classification
anthropogenic,host_associated
Host-associated Taxon
Bos taurus (
9913
)
DISEASE
Original Query
None
DOID/SYMP
Visualization
PNG
JSON
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Plasmids from same Biosample
NZ_CP117310.1
NZ_CP117309.1
NZ_CP117308.1
Similar Plasmids
based on Mash distance
NZ_CP117304.1
See Comparison
NZ_CP117321.1
See Comparison
NZ_CP117316.1
See Comparison
NZ_CP117304.1
See Comparison
NZ_CP117304.1
See Comparison
NZ_CP117321.1
See Comparison
NZ_CP117316.1
See Comparison
NZ_CP117321.1
See Comparison
NZ_CP117316.1
See Comparison
NZ_CP117311.1
See Comparison
NZ_CP117304.1
See Comparison
NZ_CP117321.1
See Comparison
NZ_CP117316.1
See Comparison
NZ_CP117304.1
See Comparison
NZ_CP117321.1
See Comparison
NZ_CP117316.1
See Comparison
NZ_CP117304.1
See Comparison
NZ_CP117321.1
See Comparison
NZ_CP117316.1
See Comparison
Plasmid Visualization
JSON
GENBANK
NUCCORE ACC
Source
Element Name
Display
Sequence
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NUCCORE ACC
Source
Element Name
Display
Sequence
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Annotations
based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC
Gene
Locus Tag
Product
Protein id
Codon Start
Translation Table
GO process
NUCCORE ACC
Gene
Locus Tag
Product
Protein id
Codon Start
Translation Table
GO process
Typing
based on MOB-Typer and Plasmid Multilocus Sequencing Typing (
PMLST
)
NUCCORE ACC
Contigs
md5 hash
Replicon Type
Relaxase Type
MPF Type
OriT Type
Predicted Mobility
Primary Cluster ID
Secondary Cluster ID
Observed Host Range Ncbi Rank
Observed Host Range Ncbi Name
Mash Nearest Neighbor
Mash Neighbor Distance
Mash Neighbor Identification
Reported Host Range Lit Rank
Reported Host Range Lit Name
Replicon Type Accession
Relaxase Type Accession
MPF Type Accession
OriT Type Accession
Associated PMID(s)
NUCCORE ACC
Contigs
md5 hash
Replicon Type
Relaxase Type
MPF Type
OriT Type
Predicted Mobility
Primary Cluster ID
Secondary Cluster ID
Observed Host Range Ncbi Rank
Observed Host Range Ncbi Name
Mash Nearest Neighbor
Mash Neighbor Distance
Mash Neighbor Identification
Reported Host Range Lit Rank
Reported Host Range Lit Name
Replicon Type Accession
Relaxase Type Accession
MPF Type Accession
OriT Type Accession
Associated PMID(s)
BLAST results of detected typing markers by MOB-type
NUCCORE ACC
biomarker
MOB-suite ID
Element
Start
End
Strand
Identity
Coverage
Evalue
Bitscore
NUCCORE ACC
biomarker
MOB-suite ID
Element
Start
End
Strand
Identity
Coverage
Evalue
Bitscore