Plasmid NZ_CP127261.1

Sequence

Nucleotide Information

Accession NZ_CP127261.1
Description Escherichia coli strain TW10828 plasmid pTW10828_17.3k, complete sequence
Source refseq
Topology circular
Length 17322 bp
GC Content 0.49 %
Created at NCBI Oct. 7, 2023



Assembly

Genome Data Information

Accession GCF_032368225.1
Assembly Coverage 372


Biosample

Curated Collection Information
Accession 35084059

PLASMID INFORMATION
BIOSAMPLE_pathotype ETEC

GEOGRAPHICAL INFORMATION
Original Query 11.52N;15.36W
Original Query Type coordinates
Coordinates (Lat/Lon) 11.52/-15.36
Address Sector de Empada, Quinara Region, South, Guinea-Bissau

ECOSYSTEM
Original Query Homo sapiens,stool
Classification fecal,gastrointestinal_system,host_associated
Host-associated Taxon
  • Homo sapiens (9606)
Host-associated Age 10 months
Host-associated Sex female

DISEASE
Original Query Diarrhea
DOID/SYMP
  • Diarrhea (DOID:13250 )
    • A gastrointestinal system disease described as the condition of having frequent loose or liquid bowel movements. Acute diarrhea is a common cause of death in developing countries and the second most common cause of infant deaths worldwide. The loss of fluids through diarrhea can cause severe dehydration which is one cause of death in diarrhea sufferers. Along with water, sufferers also lose dangerous amounts of important salts, electrolytes, and other nutrients. There are at least four types of diarrhea: secretory diarrhea, osmotic diarrhea, motility-related diarrhea, and inflammatory diarrhea.

Visualization

PNG JSON

Plasmids from same Biosample





Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process
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NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACCReplicon TypeRelaxase TypeMPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank
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NUCCORE ACCReplicon TypeRelaxase TypeMPF TypeOriT TypePredicted MobilityPrimary Cluster IDSecondary Cluster IDObserved Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank




BLAST results of detected typing markers by MOB-type
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
relaxaseNC_020251_00005MOBP12992069plus86.6921002.03e-143463
oriTCP018722MOBP557641plus1001001.07e-36158
oriTCP018722MOBP63296413plus1001001.07e-36158
oriTCP018722MOBP1210412188plus1001001.07e-36158
repliconEF088686_00008rep_cluster_23351334minus81.586833.2100000000000005e-70272
repliconCP045830_00002rep_cluster_239256665888plus92.825871.42e-85322
repliconCP045830_00002rep_cluster_23921144111663plus92.825871.42e-85322
repliconCP045830_00002rep_cluster_23921721617322plus91.589872.55e-33148
relaxaseNC_017321_00002MOBP67317081plus92.308991.1e-63215
relaxaseNC_019076_00002MOBP71758623plus91.2241000842
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
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Detected typing markers by plasmidfinder
NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2
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NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2