Plasmid NZ_CP116107.1

Sequence

Nucleotide Information

Accession NZ_CP116107.1
Description Escherichia coli strain DETEC-P829 plasmid pDETEC65, complete sequence
Source refseq
Topology circular
Length 266247 bp
GC Content 0.47 %
Created at NCBI Jan. 25, 2023



Assembly

Genome Data Information

Accession GCF_027944735.1
Assembly Coverage 10


Biosample

Curated Collection Information
Accession 31988481

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query China,Guangzhou
Original Query Type name
Coordinates (Lat/Lon) 23.13/113.26
Address China,Guangzhou

ECOSYSTEM
Original Query whole organism,ICU patient rectal swab
Classification disease,gastrointestinal_system,host_associated,rectal
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query None
DOID/SYMP
  • Disease (DOID:4 )
    • A disease is a disposition (i) to undergo pathological processes that (ii) exists in an organism because of one or more disorders in that organism.

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

NZ_CP093406.1 See Comparison
NZ_CP085623.1 See Comparison
NZ_CP084217.1 See Comparison
NZ_CP079936.1 See Comparison
NZ_CP068042.1 See Comparison
NZ_CP070297.1 See Comparison
NZ_CP132982.1 See Comparison
NZ_CP138804.1 See Comparison
NZ_CP138781.1 See Comparison
NZ_CP138765.1 See Comparison
NZ_MZ152088.1 See Comparison
CP063719.1 See Comparison
NZ_CP123952.1 See Comparison
NZ_AP023191.1 See Comparison
NZ_AP023198.1 See Comparison
NZ_MN539018.1 See Comparison
NZ_CP093406.1 See Comparison
NZ_CP074357.1 See Comparison
NZ_CP103330.1 See Comparison
NZ_CP069382.1 See Comparison
NZ_CP101211.1 See Comparison
NZ_CP093915.1 See Comparison
NZ_CP132982.1 See Comparison
NZ_CP085623.1 See Comparison
NZ_CP079936.1 See Comparison
NZ_CP068042.1 See Comparison
NZ_CP084217.1 See Comparison
NZ_CP070297.1 See Comparison
NZ_CP138804.1 See Comparison
NZ_CP138781.1 See Comparison
NZ_CP138765.1 See Comparison
NZ_CP123952.1 See Comparison
NZ_MZ152088.1 See Comparison
NZ_CP074357.1 See Comparison
NZ_AP023191.1 See Comparison
NZ_AP023198.1 See Comparison
CP063719.1 See Comparison
NZ_MN539018.1 See Comparison
NZ_CP103330.1 See Comparison
NZ_CP093406.1 See Comparison
NZ_CP101211.1 See Comparison
NZ_CP069382.1 See Comparison
NZ_CP093915.1 See Comparison
NZ_CP132982.1 See Comparison
NZ_CP085623.1 See Comparison
NZ_CP079936.1 See Comparison
NZ_CP068042.1 See Comparison
NZ_CP084217.1 See Comparison
NZ_CP070297.1 See Comparison
NZ_CP138804.1 See Comparison
NZ_CP138781.1 See Comparison
NZ_CP138765.1 See Comparison
NZ_MZ152088.1 See Comparison
NZ_AP023198.1 See Comparison
NZ_CP123952.1 See Comparison
NZ_CP101211.1 See Comparison
NZ_CP074357.1 See Comparison
NZ_CP103330.1 See Comparison
NZ_AP023191.1 See Comparison
CP063719.1 See Comparison
NZ_MN539018.1 See Comparison
NZ_CP069382.1 See Comparison
NZ_CP093915.1 See Comparison
NZ_CP085623.1 See Comparison
NZ_CP084217.1 See Comparison
NZ_CP093406.1 See Comparison
NZ_CP079936.1 See Comparison
NZ_CP070297.1 See Comparison
NZ_CP068042.1 See Comparison
NZ_CP123952.1 See Comparison
NZ_CP132982.1 See Comparison
NZ_CP138804.1 See Comparison
NZ_CP138781.1 See Comparison
NZ_CP138765.1 See Comparison
NZ_MZ152088.1 See Comparison
NZ_CP074357.1 See Comparison
NZ_AP023191.1 See Comparison
CP063719.1 See Comparison
NZ_MN539018.1 See Comparison
NZ_AP023198.1 See Comparison
NZ_CP103330.1 See Comparison
NZ_CP101211.1 See Comparison
NZ_CP069382.1 See Comparison
NZ_CP093915.1 See Comparison
NZ_CP068042.1 See Comparison
NZ_CP093406.1 See Comparison
NZ_CP084217.1 See Comparison
NZ_CP085623.1 See Comparison
NZ_CP079936.1 See Comparison
NZ_CP070297.1 See Comparison
CP063719.1 See Comparison
NZ_MZ152088.1 See Comparison
NZ_CP123952.1 See Comparison
NZ_CP132982.1 See Comparison
NZ_CP138804.1 See Comparison
NZ_CP138781.1 See Comparison
NZ_CP138765.1 See Comparison
NZ_AP023191.1 See Comparison
NZ_AP023198.1 See Comparison
NZ_MN539018.1 See Comparison
NZ_CP069382.1 See Comparison
NZ_CP074357.1 See Comparison
NZ_CP103330.1 See Comparison
NZ_CP116107.1 See Comparison
NZ_CP101211.1 See Comparison
NZ_CP093406.1 See Comparison
NZ_CP093915.1 See Comparison
NZ_CP085623.1 See Comparison
NZ_CP079936.1 See Comparison
NZ_CP084217.1 See Comparison
NZ_CP068042.1 See Comparison
NZ_CP070297.1 See Comparison
NZ_MZ152088.1 See Comparison
NZ_CP132982.1 See Comparison
NZ_CP138804.1 See Comparison
NZ_CP138781.1 See Comparison
NZ_CP138765.1 See Comparison
NZ_CP074357.1 See Comparison
NZ_AP023191.1 See Comparison
NZ_AP023198.1 See Comparison
CP063719.1 See Comparison
NZ_MN539018.1 See Comparison
NZ_CP123952.1 See Comparison
NZ_CP103330.1 See Comparison
NZ_CP101211.1 See Comparison
NZ_CP069382.1 See Comparison
NZ_CP093915.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore