Plasmid NZ_CP069382.1

Sequence

Nucleotide Information

Accession NZ_CP069382.1
Description Salmonella enterica strain GSJ/2016-Sal-016 plasmid pSal016, complete sequence
Source refseq
Topology circular
Length 259529 bp
GC Content 0.47 %
Created at NCBI June 2, 2022



Assembly

Genome Data Information

Accession GCF_023612355.1
Assembly Coverage 10


Biosample

Curated Collection Information
Accession 14309716

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query China,Guangzhou
Original Query Type name
Coordinates (Lat/Lon) 23.13/113.26
Address China,Guangzhou

ECOSYSTEM
Original Query whole organism,weever
Classification host_associated
Host-associated Taxon
  • Trachinus draco (56737)

DISEASE
Original Query None
DOID/SYMP

Visualization

PNG JSON



Similar Plasmids

based on Mash distance

NZ_CP079936.1 See Comparison
NZ_CP068042.1 See Comparison
NZ_CP070297.1 See Comparison
NZ_CP132982.1 See Comparison
NZ_CP138804.1 See Comparison
NZ_CP138781.1 See Comparison
NZ_CP138765.1 See Comparison
NZ_MN539018.1 See Comparison
NZ_MZ152088.1 See Comparison
NZ_CP123952.1 See Comparison
CP063719.1 See Comparison
NZ_CP085623.1 See Comparison
NZ_CP074357.1 See Comparison
NZ_CP116107.1 See Comparison
NZ_MZ152088.1 See Comparison
NZ_CP084217.1 See Comparison
NZ_CP079936.1 See Comparison
NZ_CP068042.1 See Comparison
NZ_CP070297.1 See Comparison
NZ_CP132982.1 See Comparison
NZ_CP138804.1 See Comparison
NZ_CP138781.1 See Comparison
NZ_CP138765.1 See Comparison
NZ_CP074357.1 See Comparison
NZ_CP123952.1 See Comparison
CP063719.1 See Comparison
NZ_MN539018.1 See Comparison
NZ_CP116107.1 See Comparison
NZ_CP084217.1 See Comparison
NZ_CP085623.1 See Comparison
NZ_CP070297.1 See Comparison
NZ_CP079936.1 See Comparison
NZ_CP068042.1 See Comparison
NZ_CP132982.1 See Comparison
NZ_CP138804.1 See Comparison
NZ_CP138781.1 See Comparison
NZ_CP138765.1 See Comparison
NZ_MN539018.1 See Comparison
NZ_MZ152088.1 See Comparison
NZ_CP123952.1 See Comparison
CP063719.1 See Comparison
NZ_CP074357.1 See Comparison
NZ_CP084217.1 See Comparison
NZ_CP085623.1 See Comparison
NZ_CP116107.1 See Comparison
NZ_CP123952.1 See Comparison
NZ_CP068042.1 See Comparison
NZ_CP070297.1 See Comparison
NZ_CP132982.1 See Comparison
NZ_CP138804.1 See Comparison
NZ_CP138781.1 See Comparison
NZ_CP138765.1 See Comparison
NZ_CP079936.1 See Comparison
NZ_MZ152088.1 See Comparison
NZ_CP116107.1 See Comparison
CP063719.1 See Comparison
NZ_MN539018.1 See Comparison
NZ_CP074357.1 See Comparison
NZ_CP085623.1 See Comparison
NZ_CP079936.1 See Comparison
NZ_CP084217.1 See Comparison
NZ_MZ152088.1 See Comparison
NZ_CP070297.1 See Comparison
NZ_CP132982.1 See Comparison
NZ_CP068042.1 See Comparison
NZ_CP138804.1 See Comparison
NZ_CP138781.1 See Comparison
NZ_CP138765.1 See Comparison
NZ_CP123952.1 See Comparison
NZ_CP116107.1 See Comparison
CP063719.1 See Comparison
NZ_MN539018.1 See Comparison
NZ_CP074357.1 See Comparison
NZ_CP123952.1 See Comparison
NZ_CP084217.1 See Comparison
NZ_CP079936.1 See Comparison
NZ_CP069382.1 See Comparison
NZ_CP085623.1 See Comparison
NZ_CP068042.1 See Comparison
NZ_CP070297.1 See Comparison
NZ_CP132982.1 See Comparison
NZ_CP138804.1 See Comparison
NZ_CP138781.1 See Comparison
NZ_CP138765.1 See Comparison
NZ_MZ152088.1 See Comparison
NZ_CP074357.1 See Comparison
CP063719.1 See Comparison
NZ_MN539018.1 See Comparison
NZ_CP068042.1 See Comparison
NZ_CP084217.1 See Comparison
NZ_CP116107.1 See Comparison
NZ_CP085623.1 See Comparison
NZ_CP079936.1 See Comparison
NZ_CP070297.1 See Comparison
NZ_CP123952.1 See Comparison
NZ_CP132982.1 See Comparison
NZ_CP138804.1 See Comparison
NZ_CP138781.1 See Comparison
NZ_CP138765.1 See Comparison
NZ_MZ152088.1 See Comparison
NZ_CP116107.1 See Comparison
NZ_CP074357.1 See Comparison
CP063719.1 See Comparison
NZ_MN539018.1 See Comparison
NZ_CP085623.1 See Comparison
NZ_CP084217.1 See Comparison


Plasmid Visualization

JSON GENBANK

SourceElement Name Display Sequence Favorite
amrfinderplusarr-2copy
amrfinderplusblaLAP-2copy
amrfinderplusblaCTX-M-55copy
amrfinderplusaph(3')-Iacopy
amrfinderplusaac(3)-IIdcopy
amrfinderplusaph(6)-Idcopy
amrfinderplusblaTEM-1copy
amrfinderplusaadA22copy
amrfinderplusdfrA14copy
amrfinderpluslnu(F)copy
SourceElement NameDisplaySequenceFavorite
Showing 1 to 10 of 286 entries
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Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process
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NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD
NUCCORE ACCAnalysis Software NameReference Database VersionGene SymbolGene NameDrug ClassAntimicrobial AgentGene StartGene StopGene LengthStrand OrientationSequence Identity (%)Coverage (%)
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NUCCORE ACCAnalysis Software NameReference Database VersionGene SymbolGene NameDrug ClassAntimicrobial AgentGene StartGene StopGene LengthStrand OrientationSequence Identity (%)Coverage (%)



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACCReplicon TypeRelaxase TypeMPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank
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NUCCORE ACCReplicon TypeRelaxase TypeMPF TypeOriT TypePredicted MobilityPrimary Cluster IDSecondary Cluster IDObserved Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank




BLAST results of detected typing markers by MOB-type
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
mate-pair-formationNC_005211_00005MPF_F27583543plus1001002.33e-172533
mate-pair-formationNC_009838_00006MPF_F35464814plus1001000803
mate-pair-formationNC_005211_00012MPF_T895511633plus10010001873
mate-pair-formationNC_021845_00017MPF_F3005431562plus99.0061000990
mate-pair-formationNC_005211_00030MPF_F3170432759plus99.716990734
mate-pair-formationNC_005211_00200MPF_F184583185995minus1001000933
mate-pair-formationNC_005211_00207MPF_F194073196154plus99.85610001421
oriTNC_015864MOBH187032187624plus10010001096
repliconBX664015IncHI2A211840plus99.52410001147
replicon000340__KU353730rep_cluster_10885639857360plus10010001779
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
Showing 1 to 10 of 11 entries


Detected typing markers by plasmidfinder
NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2
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NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2