Plasmid NZ_CP103330.1

Sequence

Nucleotide Information

Accession NZ_CP103330.1
Description Escherichia coli strain ZY22049 plasmid p1, complete sequence
Source refseq
Topology circular
Length 261664 bp
GC Content 0.47 %
Created at NCBI Feb. 7, 2023



Assembly

Genome Data Information

Accession GCF_028473865.1
Assembly Coverage >100000


Biosample

Curated Collection Information
Accession 30450095

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query 24.79N;103.15E
Original Query Type coordinates
Coordinates (Lat/Lon) 24.79/103.15
Address Goujie, Yiliang County, Kunming, Yunnan, China

ECOSYSTEM
Original Query feces
Classification fecal,gastrointestinal_system,host_associated
Host-associated Taxon

DISEASE
Original Query None
DOID/SYMP

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

CP063719.1 See Comparison
NZ_CP116107.1 See Comparison
NZ_CP101211.1 See Comparison
NZ_CP093915.1 See Comparison
NZ_CP084217.1 See Comparison
NZ_CP079936.1 See Comparison
NZ_CP068042.1 See Comparison
NZ_CP070297.1 See Comparison
NZ_CP085623.1 See Comparison
NZ_CP068042.1 See Comparison
NZ_CP123952.1 See Comparison
NZ_CP101211.1 See Comparison
NZ_CP093915.1 See Comparison
NZ_CP084217.1 See Comparison
NZ_CP132982.1 See Comparison
NZ_CP138804.1 See Comparison
NZ_CP138781.1 See Comparison
NZ_CP138765.1 See Comparison
CP063719.1 See Comparison
NZ_CP116107.1 See Comparison
NZ_CP085623.1 See Comparison
NZ_CP079936.1 See Comparison
NZ_CP138804.1 See Comparison
NZ_CP070297.1 See Comparison
NZ_CP138781.1 See Comparison
NZ_CP138765.1 See Comparison
NZ_CP116107.1 See Comparison
CP063719.1 See Comparison
NZ_CP103330.1 See Comparison
NZ_CP132982.1 See Comparison
NZ_CP123952.1 See Comparison
NZ_CP084217.1 See Comparison
NZ_CP101211.1 See Comparison
NZ_CP085623.1 See Comparison
NZ_CP093915.1 See Comparison
NZ_CP132982.1 See Comparison
NZ_CP079936.1 See Comparison
NZ_CP068042.1 See Comparison
NZ_CP070297.1 See Comparison
NZ_CP138804.1 See Comparison
NZ_CP138781.1 See Comparison
NZ_CP138765.1 See Comparison
NZ_CP123952.1 See Comparison
CP063719.1 See Comparison
NZ_CP116107.1 See Comparison
NZ_CP084217.1 See Comparison
NZ_CP101211.1 See Comparison
NZ_CP085623.1 See Comparison
NZ_CP093915.1 See Comparison
CP063719.1 See Comparison
NZ_CP068042.1 See Comparison
NZ_CP070297.1 See Comparison
NZ_CP132982.1 See Comparison
NZ_CP138804.1 See Comparison
NZ_CP138781.1 See Comparison
NZ_CP138765.1 See Comparison
NZ_CP123952.1 See Comparison
NZ_CP079936.1 See Comparison
NZ_CP116107.1 See Comparison
NZ_CP116107.1 See Comparison
NZ_CP101211.1 See Comparison
NZ_CP093915.1 See Comparison
NZ_CP085623.1 See Comparison
NZ_CP079936.1 See Comparison
NZ_CP132982.1 See Comparison
NZ_CP138804.1 See Comparison
NZ_CP138781.1 See Comparison
NZ_CP138765.1 See Comparison
NZ_CP084217.1 See Comparison
NZ_CP068042.1 See Comparison
NZ_CP070297.1 See Comparison
NZ_CP123952.1 See Comparison
CP063719.1 See Comparison
NZ_CP084217.1 See Comparison
NZ_CP101211.1 See Comparison
NZ_CP093915.1 See Comparison
NZ_CP085623.1 See Comparison
NZ_CP132982.1 See Comparison
NZ_CP079936.1 See Comparison
NZ_CP068042.1 See Comparison
NZ_CP070297.1 See Comparison
NZ_CP138804.1 See Comparison
NZ_CP138781.1 See Comparison
NZ_CP138765.1 See Comparison
CP063719.1 See Comparison
NZ_CP123952.1 See Comparison
NZ_CP101211.1 See Comparison
NZ_CP116107.1 See Comparison
NZ_CP068042.1 See Comparison
NZ_CP084217.1 See Comparison
NZ_CP093915.1 See Comparison
NZ_CP085623.1 See Comparison
NZ_CP079936.1 See Comparison
NZ_CP070297.1 See Comparison
NZ_CP132982.1 See Comparison
NZ_CP138804.1 See Comparison
NZ_CP138781.1 See Comparison
NZ_CP138765.1 See Comparison
NZ_CP123952.1 See Comparison


Plasmid Visualization

JSON GENBANK

SourceElement Name Display Sequence Favorite
amrfinderplusaph(6)-Idcopy
amrfinderplusarr-2copy
amrfinderplusblaCTX-M-55copy
amrfinderplusaph(3')-Iacopy
amrfinderplusaac(3)-IIdcopy
amrfinderplusfloRcopy
amrfinderplusaadA22copy
amrfinderplusdfrA14copy
amrfinderpluslnu(F)copy
rgimef(B)copy
SourceElement NameDisplaySequenceFavorite
Showing 1 to 10 of 291 entries
…



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process
Loading...
NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD
NUCCORE ACCAnalysis Software NameReference Database VersionGene SymbolGene NameDrug ClassAntimicrobial AgentGene StartGene StopGene LengthStrand OrientationSequence Identity (%)Coverage (%)
Loading...
NUCCORE ACCAnalysis Software NameReference Database VersionGene SymbolGene NameDrug ClassAntimicrobial AgentGene StartGene StopGene LengthStrand OrientationSequence Identity (%)Coverage (%)



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACCReplicon TypeRelaxase TypeMPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank
Loading...
NUCCORE ACCReplicon TypeRelaxase TypeMPF TypeOriT TypePredicted MobilityPrimary Cluster IDSecondary Cluster IDObserved Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank




BLAST results of detected typing markers by MOB-type
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
repliconBX664015IncHI2A211840plus99.52410001147
replicon000340__KU353730rep_cluster_10885639857360plus10010001779
relaxaseNC_012555_00231MOBH184679187822plus99.14110002122
mate-pair-formationNC_005211_00005MPF_F27583543plus1001002.33e-172533
mate-pair-formationNC_009838_00006MPF_F35464814plus1001000803
mate-pair-formationNC_005211_00012MPF_T895511633plus10010001873
mate-pair-formationNC_021845_00017MPF_F3005431562plus99.0061000990
mate-pair-formationNC_005211_00030MPF_F3170432759plus99.716990734
mate-pair-formationNC_005211_00200MPF_F178335179747minus1001000933
mate-pair-formationNC_005211_00207MPF_F187825189906plus99.85610001421
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
Showing 1 to 10 of 11 entries


Detected typing markers by plasmidfinder
NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2
Loading...
NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2