Plasmid NZ_CP109949.1

Sequence

Nucleotide Information

Accession NZ_CP109949.1
Description Klebsiella pneumoniae strain KP1650 plasmid pKP1650-1, complete sequence
Source refseq
Topology circular
Length 194879 bp
GC Content 0.51 %
Created at NCBI Nov. 3, 2022



Assembly

Genome Data Information

Accession GCF_025946845.1
Assembly Coverage 30.65


Biosample

Curated Collection Information
Accession 31373057

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query 22.28N;113.58E
Original Query Type coordinates
Coordinates (Lat/Lon) 22.28/113.58
Address Haiyu Road, Xiangwan Subdistrict, Xiangzhou District, Zhuhai, Guangdong Province, 519000, China

ECOSYSTEM
Original Query Homo sapiens,Bronchoalveolar lavage fluid
Classification bronchi,host_associated,respiratory_system
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query severe pulmonary infection
DOID/SYMP
  • Lung disease (DOID:850 )
    • A lower respiratory tract disease in which the function of the lungs is adversely affected by narrowing or blockage of the airways resulting in poor air flow, a loss of elasticity in the lungs that produces a decrease in the total volume of air that the lungs are able to hold, and clotting, scarring, or inflammation of the blood vessels that affect the ability of the lungs to take up oxygen and to release carbon dioxide.

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

NZ_CP031935.1 See Comparison
NZ_CP109974.1 See Comparison
NZ_CP106761.1 See Comparison
NZ_CP104316.1 See Comparison
NZ_CP102837.1 See Comparison
NZ_CP101786.1 See Comparison
NZ_CP090344.1 See Comparison
NZ_CP101774.1 See Comparison
CP076672.1 See Comparison
NZ_CP090433.1 See Comparison
NZ_CP084706.1 See Comparison
NZ_CP082754.1 See Comparison
NZ_CP034124.1 See Comparison
NZ_CP141667.1 See Comparison
NZ_CP132049.1 See Comparison
NZ_CP132043.1 See Comparison
NZ_CP130663.1 See Comparison
NZ_CP154345.1 See Comparison
NZ_CP154491.1 See Comparison
NZ_CP147834.1 See Comparison
CP071163.1 See Comparison
NZ_CP141601.1 See Comparison
NZ_CP109974.1 See Comparison
NZ_CP069171.1 See Comparison
NZ_CP031935.1 See Comparison
NZ_CP101786.1 See Comparison
NZ_CP104316.1 See Comparison
NZ_CP102837.1 See Comparison
NZ_CP106761.1 See Comparison
NZ_CP090344.1 See Comparison
NZ_CP101774.1 See Comparison
NZ_CP082754.1 See Comparison
CP076672.1 See Comparison
NZ_CP090433.1 See Comparison
NZ_CP084706.1 See Comparison
NZ_CP069171.1 See Comparison
NZ_CP034124.1 See Comparison
NZ_CP130663.1 See Comparison
NZ_CP154345.1 See Comparison
NZ_CP154491.1 See Comparison
CP071163.1 See Comparison
NZ_CP132049.1 See Comparison
NZ_CP132043.1 See Comparison
NZ_CP147834.1 See Comparison
NZ_CP141667.1 See Comparison
NZ_CP141601.1 See Comparison
NZ_CP106761.1 See Comparison
NZ_CP031935.1 See Comparison
NZ_CP109949.1 See Comparison
NZ_CP109974.1 See Comparison
NZ_CP104316.1 See Comparison
NZ_CP102837.1 See Comparison
NZ_CP084706.1 See Comparison
CP076672.1 See Comparison
NZ_CP101786.1 See Comparison
NZ_CP090344.1 See Comparison
NZ_CP101774.1 See Comparison
NZ_CP090433.1 See Comparison
NZ_CP082754.1 See Comparison
NZ_CP132049.1 See Comparison
NZ_CP034124.1 See Comparison
NZ_CP132043.1 See Comparison
CP071163.1 See Comparison
NZ_CP154345.1 See Comparison
NZ_CP154491.1 See Comparison
NZ_CP141667.1 See Comparison
NZ_CP141601.1 See Comparison
NZ_CP130663.1 See Comparison
NZ_CP147834.1 See Comparison
NZ_CP031935.1 See Comparison
NZ_CP069171.1 See Comparison
NZ_CP106761.1 See Comparison
NZ_CP109974.1 See Comparison
NZ_CP102837.1 See Comparison
NZ_CP104316.1 See Comparison
NZ_CP084706.1 See Comparison
NZ_CP090433.1 See Comparison
NZ_CP101786.1 See Comparison
NZ_CP090344.1 See Comparison
NZ_CP101774.1 See Comparison
CP076672.1 See Comparison
NZ_CP130663.1 See Comparison
NZ_CP082754.1 See Comparison
NZ_CP034124.1 See Comparison
NZ_CP132049.1 See Comparison
NZ_CP132043.1 See Comparison
NZ_CP141667.1 See Comparison
NZ_CP154345.1 See Comparison
NZ_CP154491.1 See Comparison
NZ_CP147834.1 See Comparison
NZ_CP141601.1 See Comparison
NZ_CP031935.1 See Comparison
CP071163.1 See Comparison
NZ_CP069171.1 See Comparison
NZ_CP109974.1 See Comparison
NZ_CP101786.1 See Comparison
NZ_CP106761.1 See Comparison
NZ_CP104316.1 See Comparison
NZ_CP102837.1 See Comparison
NZ_CP090344.1 See Comparison
NZ_CP101774.1 See Comparison
NZ_CP130663.1 See Comparison
NZ_CP090433.1 See Comparison
NZ_CP084706.1 See Comparison
NZ_CP034124.1 See Comparison
NZ_CP132049.1 See Comparison
NZ_CP132043.1 See Comparison
CP076672.1 See Comparison
NZ_CP082754.1 See Comparison
NZ_CP141667.1 See Comparison
NZ_CP154345.1 See Comparison
NZ_CP154491.1 See Comparison
NZ_CP147834.1 See Comparison
NZ_CP141601.1 See Comparison
NZ_CP031935.1 See Comparison
NZ_CP069171.1 See Comparison
CP071163.1 See Comparison
NZ_CP109974.1 See Comparison
NZ_CP101786.1 See Comparison
NZ_CP106761.1 See Comparison
NZ_CP104316.1 See Comparison
NZ_CP102837.1 See Comparison
NZ_CP090344.1 See Comparison
NZ_CP101774.1 See Comparison
CP076672.1 See Comparison
NZ_CP082754.1 See Comparison
NZ_CP090433.1 See Comparison
NZ_CP084706.1 See Comparison
NZ_CP034124.1 See Comparison
NZ_CP132049.1 See Comparison
NZ_CP132043.1 See Comparison
NZ_CP147834.1 See Comparison
NZ_CP130663.1 See Comparison
NZ_CP154345.1 See Comparison
NZ_CP154491.1 See Comparison
CP071163.1 See Comparison
NZ_CP141667.1 See Comparison
NZ_CP141601.1 See Comparison
NZ_CP069171.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)



Biosynthetic Gene Clusters

based on ANTISMASH

Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore