Plasmid NZ_CP090433.1

Sequence

Nucleotide Information

Accession NZ_CP090433.1
Description Klebsiella pneumoniae subsp. pneumoniae strain KPN857 plasmid pA, complete sequence
Source refseq
Topology circular
Length 192941 bp
GC Content 0.50 %
Created at NCBI Jan. 15, 2022



Assembly

Genome Data Information

Accession GCF_021442005.1
Assembly Coverage 203


Biosample

Curated Collection Information
Accession 24571286

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query 22.925801N;113.862947E
Original Query Type coordinates
Coordinates (Lat/Lon) 22.93/113.86
Address Guangdong Medical University (Dongguan Campus), Qinyuan Road, Songshanhu, Songshan Lake, Dalang Town, Dongguan, Guangdong Province, 523812, China

ECOSYSTEM
Original Query Homo sapiens,blood
Classification blood,circulatory_system,host_associated
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query COPD
DOID/SYMP
  • Chronic obstructive pulmonary disease (DOID:3083 )
    • An obstructive lung disease that is a chronic and progressive disorder of small airways in the lungs and that is characterized by irreversible airflow obstruction, typically identified by reductions in quantitative spirometric indices, induced forced expiratory volume at 1 second (FEV1) and the ratio of FEV1 to forced vital capacity (less than 0.7 is diagnostic of COPD). Lung volume is increased and pulmonary hypertension may occur. The pathologic changes result in the disruption of the airflow in the bronchial airways. Signs and symptoms include shortness of breath, wheezing, productive cough and chest tightness. COPD is a consequence (an end result) of chronic bronchitis, emphysema or both.

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

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NZ_CP034124.1 See Comparison
NZ_CP055295.1 See Comparison
NZ_CP041374.1 See Comparison
NZ_CP033955.1 See Comparison
NZ_CP136844.1 See Comparison
NZ_CP136268.1 See Comparison
NZ_CP141667.1 See Comparison
NZ_CP130663.1 See Comparison
NZ_CP154345.1 See Comparison
NZ_CP154491.1 See Comparison
NZ_CP147834.1 See Comparison
NZ_CP132049.1 See Comparison
NZ_CP141601.1 See Comparison
NZ_CP066250.1 See Comparison
CP071163.1 See Comparison
NZ_CP069171.1 See Comparison
NZ_CP031935.1 See Comparison
NZ_CP109974.1 See Comparison
NZ_MN182749.1 See Comparison
NZ_CP109949.1 See Comparison
NZ_CP104316.1 See Comparison
NZ_CP106761.1 See Comparison
NZ_CP102837.1 See Comparison
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NZ_CP101774.1 See Comparison
NZ_CP087624.1 See Comparison
NZ_CP101786.1 See Comparison
NZ_CP090344.1 See Comparison
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NZ_CP087143.1 See Comparison
NZ_CP087147.1 See Comparison
NZ_CP087152.1 See Comparison
NZ_CP066152.1 See Comparison
NZ_CP041374.1 See Comparison
NZ_CP082754.1 See Comparison
NZ_CP082760.1 See Comparison
NZ_CP082766.1 See Comparison
NZ_CP080298.1 See Comparison
NZ_CP055295.1 See Comparison
NZ_CP136268.1 See Comparison
NZ_CP136844.1 See Comparison
NZ_CP033955.1 See Comparison
NZ_CP034124.1 See Comparison
NZ_CP130663.1 See Comparison
NZ_CP132049.1 See Comparison
NZ_CP132043.1 See Comparison
NZ_MN182749.1 See Comparison
NZ_CP147834.1 See Comparison
NZ_CP141667.1 See Comparison
NZ_CP141601.1 See Comparison
NZ_CP069171.1 See Comparison
NZ_CP066250.1 See Comparison
NZ_CP031935.1 See Comparison
NZ_CP154345.1 See Comparison
NZ_CP154491.1 See Comparison
CP071163.1 See Comparison
NZ_CP106761.1 See Comparison
NZ_CP109974.1 See Comparison
NZ_CP109949.1 See Comparison
NZ_CP102837.1 See Comparison
NZ_CP104316.1 See Comparison
CP076672.1 See Comparison
NZ_CP101786.1 See Comparison
NZ_CP090344.1 See Comparison
NZ_CP101774.1 See Comparison
NZ_CP084706.1 See Comparison
NZ_CP087624.1 See Comparison
NZ_CP087143.1 See Comparison
NZ_CP087147.1 See Comparison
NZ_CP087152.1 See Comparison
NZ_CP066152.1 See Comparison
NZ_CP055295.1 See Comparison
NZ_CP080298.1 See Comparison
NZ_CP082754.1 See Comparison
NZ_CP082760.1 See Comparison
NZ_CP082766.1 See Comparison
NZ_CP132049.1 See Comparison
NZ_CP041374.1 See Comparison
NZ_CP136844.1 See Comparison
NZ_CP033955.1 See Comparison
NZ_CP034124.1 See Comparison
NZ_CP136268.1 See Comparison
NZ_CP132043.1 See Comparison
NZ_CP154491.1 See Comparison
NZ_CP130663.1 See Comparison
NZ_CP141667.1 See Comparison
NZ_CP147834.1 See Comparison
NZ_CP154345.1 See Comparison
NZ_CP141601.1 See Comparison
CP071163.1 See Comparison
NZ_CP104316.1 See Comparison
NZ_CP069171.1 See Comparison
NZ_MN182749.1 See Comparison
NZ_CP106761.1 See Comparison
NZ_CP066250.1 See Comparison
NZ_CP031935.1 See Comparison
NZ_CP109974.1 See Comparison
NZ_CP109949.1 See Comparison
NZ_CP102837.1 See Comparison
NZ_CP101786.1 See Comparison
NZ_CP090344.1 See Comparison
NZ_CP101774.1 See Comparison
NZ_CP087624.1 See Comparison
CP076672.1 See Comparison
NZ_CP087143.1 See Comparison
NZ_CP087147.1 See Comparison
NZ_CP087152.1 See Comparison
NZ_CP090433.1 See Comparison
NZ_CP084706.1 See Comparison
NZ_CP066152.1 See Comparison
NZ_CP033955.1 See Comparison
NZ_CP082760.1 See Comparison
NZ_CP082766.1 See Comparison
NZ_CP080298.1 See Comparison
NZ_CP041374.1 See Comparison
NZ_CP082754.1 See Comparison
NZ_CP055295.1 See Comparison
NZ_CP147834.1 See Comparison
NZ_CP132049.1 See Comparison
NZ_CP132043.1 See Comparison
NZ_CP034124.1 See Comparison
NZ_CP136844.1 See Comparison
NZ_CP136268.1 See Comparison
NZ_CP130663.1 See Comparison
NZ_CP154345.1 See Comparison
NZ_CP154491.1 See Comparison
NZ_CP031935.1 See Comparison
NZ_CP141601.1 See Comparison
NZ_CP069171.1 See Comparison
NZ_CP066250.1 See Comparison
NZ_CP141667.1 See Comparison
CP071163.1 See Comparison
NZ_CP106761.1 See Comparison
NZ_MN182749.1 See Comparison
NZ_CP109974.1 See Comparison
NZ_CP109949.1 See Comparison
NZ_CP087624.1 See Comparison
NZ_CP101786.1 See Comparison
NZ_CP090344.1 See Comparison
NZ_CP101774.1 See Comparison
NZ_CP104316.1 See Comparison
NZ_CP102837.1 See Comparison
CP076672.1 See Comparison
NZ_CP041374.1 See Comparison
NZ_CP087143.1 See Comparison
NZ_CP087147.1 See Comparison
NZ_CP087152.1 See Comparison
NZ_CP082754.1 See Comparison
NZ_CP082760.1 See Comparison
NZ_CP082766.1 See Comparison
NZ_CP080298.1 See Comparison
NZ_CP055295.1 See Comparison
NZ_CP066152.1 See Comparison
NZ_CP084706.1 See Comparison
NZ_CP132049.1 See Comparison
NZ_CP034124.1 See Comparison
NZ_CP136844.1 See Comparison
NZ_CP136268.1 See Comparison
NZ_CP033955.1 See Comparison
NZ_CP132043.1 See Comparison
NZ_CP031935.1 See Comparison
NZ_CP141667.1 See Comparison
CP071163.1 See Comparison
NZ_CP130663.1 See Comparison
NZ_CP154345.1 See Comparison
NZ_CP154491.1 See Comparison
NZ_CP147834.1 See Comparison
NZ_CP141601.1 See Comparison
NZ_CP069171.1 See Comparison
NZ_CP066250.1 See Comparison
NZ_CP104316.1 See Comparison
NZ_MN182749.1 See Comparison
NZ_CP109949.1 See Comparison
NZ_CP106761.1 See Comparison
NZ_CP109974.1 See Comparison
NZ_CP101786.1 See Comparison
NZ_CP102837.1 See Comparison
NZ_CP090344.1 See Comparison
NZ_CP101774.1 See Comparison
CP076672.1 See Comparison
NZ_CP087624.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)



Biosynthetic Gene Clusters

based on ANTISMASH

Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore