Plasmid NZ_CP107438.1

Sequence

Nucleotide Information

Accession NZ_CP107438.1
Description Klebsiella pneumoniae strain CRKP_17 plasmid unnamed2, complete sequence
Source refseq
Topology circular
Length 154719 bp
GC Content 0.53 %
Created at NCBI Feb. 2, 2023



Assembly

Genome Data Information

Accession GCF_028222915.1
Assembly Coverage 300


Biosample

Curated Collection Information
Accession 31207046

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query China,Wuhan
Original Query Type name
Coordinates (Lat/Lon) 30.59/114.30
Address China,Wuhan

ECOSYSTEM
Original Query Homo sapiens,sputum
Classification host_associated,respiratory_system
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query infection
DOID/SYMP
  • Disease infectious agent (DOID:0050117 )
    • A disease that is the consequence of the presence of pathogenic microbial agents, including pathogenic viruses, pathogenic bacteria, fungi, protozoa, multicellular parasites, and aberrant proteins known as prions.

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

NZ_CP107414.1 See Comparison
NZ_CP107470.1 See Comparison
NZ_CP107480.1 See Comparison
NZ_CP107404.1 See Comparison
NZ_CP107520.1 See Comparison
NZ_CP107360.1 See Comparison
NZ_CP107505.1 See Comparison
NZ_CP107515.1 See Comparison
NZ_CP107400.1 See Comparison
NZ_CP107500.1 See Comparison
NZ_CP107460.1 See Comparison
NZ_CP107475.1 See Comparison
NZ_CP107510.1 See Comparison
NZ_CP107449.1 See Comparison
NZ_CP107391.1 See Comparison
NZ_CP107443.1 See Comparison
NZ_CP107485.1 See Comparison
NZ_CP107395.1 See Comparison
NZ_CP107380.1 See Comparison
NZ_CP107423.1 See Comparison
NZ_CP107490.1 See Comparison
NZ_CP107495.1 See Comparison
NZ_CP107428.1 See Comparison
NZ_CP066897.1 See Comparison
NZ_CP097627.1 See Comparison
CP043603.1 See Comparison
CP043370.1 See Comparison
CP043366.1 See Comparison
CP089954.1 See Comparison
NZ_CP043358.1 See Comparison
CP137011.1 See Comparison
NZ_CP036301.1 See Comparison
NZ_CP033404.1 See Comparison
NZ_CP026584.1 See Comparison
NZ_CP138529.1 See Comparison
NZ_CP127236.1 See Comparison
NZ_CP039810.1 See Comparison
NZ_CP147152.1 See Comparison
NZ_CP147166.1 See Comparison
NZ_CP147156.1 See Comparison
NZ_CP147180.1 See Comparison
CP148997.1 See Comparison
NZ_CP031720.1 See Comparison
NZ_CP046963.1 See Comparison
NZ_CP066536.1 See Comparison
NZ_CP066524.1 See Comparison
CP046968.1 See Comparison
NZ_CP107360.1 See Comparison
NZ_CP107505.1 See Comparison
NZ_CP107414.1 See Comparison
NZ_CP107470.1 See Comparison
NZ_CP107515.1 See Comparison
NZ_CP107400.1 See Comparison
NZ_CP107480.1 See Comparison
NZ_CP107500.1 See Comparison
NZ_CP107460.1 See Comparison
NZ_CP107404.1 See Comparison
NZ_CP107475.1 See Comparison
NZ_CP107520.1 See Comparison
NZ_CP107485.1 See Comparison
NZ_CP107395.1 See Comparison
NZ_CP107510.1 See Comparison
NZ_CP107380.1 See Comparison
NZ_CP107449.1 See Comparison
NZ_CP107391.1 See Comparison
NZ_CP097627.1 See Comparison
NZ_CP107443.1 See Comparison
NZ_CP107423.1 See Comparison
NZ_CP107490.1 See Comparison
NZ_CP107495.1 See Comparison
NZ_CP107428.1 See Comparison
NZ_CP066897.1 See Comparison
NZ_CP033404.1 See Comparison
CP089954.1 See Comparison
NZ_CP043358.1 See Comparison
NZ_CP036301.1 See Comparison
CP043603.1 See Comparison
CP043370.1 See Comparison
CP043366.1 See Comparison
NZ_CP026584.1 See Comparison
NZ_CP031720.1 See Comparison
NZ_CP147152.1 See Comparison
NZ_CP138529.1 See Comparison
CP137011.1 See Comparison
NZ_CP127236.1 See Comparison
NZ_CP147166.1 See Comparison
NZ_CP147156.1 See Comparison
NZ_CP147180.1 See Comparison
NZ_CP066524.1 See Comparison
CP148997.1 See Comparison
NZ_CP039810.1 See Comparison
NZ_CP107414.1 See Comparison
NZ_CP066536.1 See Comparison
NZ_CP046963.1 See Comparison
NZ_CP107505.1 See Comparison
NZ_CP107470.1 See Comparison
NZ_CP107515.1 See Comparison
CP046968.1 See Comparison
NZ_CP107480.1 See Comparison
NZ_CP107400.1 See Comparison
NZ_CP107500.1 See Comparison
NZ_CP107404.1 See Comparison
NZ_CP107460.1 See Comparison
NZ_CP107520.1 See Comparison
NZ_CP107475.1 See Comparison
NZ_CP107360.1 See Comparison
NZ_CP107510.1 See Comparison
NZ_CP107490.1 See Comparison
NZ_CP107449.1 See Comparison
NZ_CP107391.1 See Comparison
NZ_CP107443.1 See Comparison
NZ_CP107395.1 See Comparison
NZ_CP107495.1 See Comparison
NZ_CP107428.1 See Comparison
NZ_CP107485.1 See Comparison
CP089954.1 See Comparison
NZ_CP066897.1 See Comparison
NZ_CP107380.1 See Comparison
NZ_CP107438.1 See Comparison
NZ_CP107423.1 See Comparison
NZ_CP097627.1 See Comparison
CP043603.1 See Comparison
CP043370.1 See Comparison
CP043366.1 See Comparison
NZ_CP033404.1 See Comparison
NZ_CP043358.1 See Comparison
NZ_CP036301.1 See Comparison
NZ_CP031720.1 See Comparison
NZ_CP026584.1 See Comparison
NZ_CP138529.1 See Comparison
CP137011.1 See Comparison
NZ_CP127236.1 See Comparison
NZ_CP039810.1 See Comparison
NZ_CP147156.1 See Comparison
NZ_CP147180.1 See Comparison
CP148997.1 See Comparison
NZ_CP147152.1 See Comparison
NZ_CP147166.1 See Comparison
NZ_CP127236.1 See Comparison
NZ_CP046963.1 See Comparison
NZ_CP107480.1 See Comparison
NZ_CP107404.1 See Comparison
NZ_CP107520.1 See Comparison
NZ_CP107360.1 See Comparison
NZ_CP107505.1 See Comparison
NZ_CP107515.1 See Comparison
NZ_CP107400.1 See Comparison
NZ_CP107500.1 See Comparison
NZ_CP107460.1 See Comparison
NZ_CP107475.1 See Comparison
NZ_CP107510.1 See Comparison
NZ_CP107449.1 See Comparison
NZ_CP107391.1 See Comparison
NZ_CP107443.1 See Comparison
NZ_CP107485.1 See Comparison
NZ_CP107395.1 See Comparison
NZ_CP107380.1 See Comparison
NZ_CP107423.1 See Comparison
NZ_CP107490.1 See Comparison
NZ_CP107495.1 See Comparison
NZ_CP107428.1 See Comparison
CP089954.1 See Comparison
NZ_CP033404.1 See Comparison
NZ_CP031720.1 See Comparison
NZ_CP066536.1 See Comparison
NZ_CP066524.1 See Comparison
CP046968.1 See Comparison
NZ_CP107414.1 See Comparison
NZ_CP107470.1 See Comparison
NZ_CP066897.1 See Comparison
NZ_CP097627.1 See Comparison
CP043603.1 See Comparison
CP043370.1 See Comparison
CP043366.1 See Comparison
NZ_CP043358.1 See Comparison
NZ_CP036301.1 See Comparison
NZ_CP026584.1 See Comparison
NZ_CP138529.1 See Comparison
CP137011.1 See Comparison
NZ_CP147156.1 See Comparison
NZ_CP147152.1 See Comparison
NZ_CP147166.1 See Comparison
CP148997.1 See Comparison
NZ_CP147180.1 See Comparison
NZ_CP066897.1 See Comparison
NZ_CP039810.1 See Comparison
NZ_CP066536.1 See Comparison
NZ_CP066524.1 See Comparison
NZ_CP046963.1 See Comparison
CP046968.1 See Comparison
NZ_CP107414.1 See Comparison
NZ_CP107470.1 See Comparison
NZ_CP107480.1 See Comparison
NZ_CP107404.1 See Comparison
NZ_CP107520.1 See Comparison
NZ_CP107360.1 See Comparison
NZ_CP107505.1 See Comparison
NZ_CP107515.1 See Comparison
NZ_CP107400.1 See Comparison
NZ_CP107500.1 See Comparison
NZ_CP107460.1 See Comparison
NZ_CP107475.1 See Comparison
NZ_CP107510.1 See Comparison
NZ_CP107449.1 See Comparison
NZ_CP107391.1 See Comparison
NZ_CP107443.1 See Comparison
NZ_CP107485.1 See Comparison
NZ_CP107395.1 See Comparison
NZ_CP107380.1 See Comparison
NZ_CP107423.1 See Comparison
NZ_CP107490.1 See Comparison
NZ_CP107495.1 See Comparison
NZ_CP107428.1 See Comparison
CP043603.1 See Comparison
NZ_CP097627.1 See Comparison
CP043370.1 See Comparison
CP043366.1 See Comparison
CP089954.1 See Comparison
NZ_CP043358.1 See Comparison
NZ_CP036301.1 See Comparison
NZ_CP026584.1 See Comparison
NZ_CP033404.1 See Comparison
NZ_CP031720.1 See Comparison
NZ_CP138529.1 See Comparison
NZ_CP127236.1 See Comparison
CP137011.1 See Comparison
NZ_CP147152.1 See Comparison
NZ_CP147166.1 See Comparison
NZ_CP147156.1 See Comparison
NZ_CP147180.1 See Comparison
CP148997.1 See Comparison
NZ_CP046963.1 See Comparison
NZ_CP066536.1 See Comparison
NZ_CP066524.1 See Comparison
NZ_CP039810.1 See Comparison
CP046968.1 See Comparison
NZ_CP107414.1 See Comparison
NZ_CP107470.1 See Comparison
NZ_CP107480.1 See Comparison
NZ_CP107404.1 See Comparison
NZ_CP107520.1 See Comparison
NZ_CP107360.1 See Comparison
NZ_CP107505.1 See Comparison
NZ_CP107515.1 See Comparison
NZ_CP107400.1 See Comparison
NZ_CP107500.1 See Comparison
NZ_CP107460.1 See Comparison
NZ_CP107475.1 See Comparison
NZ_CP107510.1 See Comparison
NZ_CP107423.1 See Comparison
NZ_CP107490.1 See Comparison
NZ_CP107495.1 See Comparison
NZ_CP107428.1 See Comparison
NZ_CP107391.1 See Comparison
NZ_CP107443.1 See Comparison
NZ_CP107485.1 See Comparison
NZ_CP107395.1 See Comparison
NZ_CP107380.1 See Comparison
NZ_CP066897.1 See Comparison
NZ_CP097627.1 See Comparison
NZ_CP107449.1 See Comparison
CP043603.1 See Comparison
CP043370.1 See Comparison
CP043366.1 See Comparison
CP089954.1 See Comparison
NZ_CP031720.1 See Comparison
NZ_CP043358.1 See Comparison
NZ_CP036301.1 See Comparison
NZ_CP033404.1 See Comparison
NZ_CP147152.1 See Comparison
NZ_CP026584.1 See Comparison
NZ_CP138529.1 See Comparison
CP137011.1 See Comparison
NZ_CP127236.1 See Comparison
NZ_CP147166.1 See Comparison
NZ_CP147180.1 See Comparison
NZ_CP147156.1 See Comparison
NZ_CP039810.1 See Comparison
CP148997.1 See Comparison
NZ_CP066536.1 See Comparison
NZ_CP066524.1 See Comparison
CP046968.1 See Comparison
NZ_CP046963.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore