Plasmid NZ_CP107438.1
Sequence
Nucleotide Information
| Accession | NZ_CP107438.1 |
|---|---|
| Description | Klebsiella pneumoniae strain CRKP_17 plasmid unnamed2, complete sequence |
| Source | refseq |
| Topology | circular |
| Length | 154719 bp |
| GC Content | 0.53 % |
| Created at NCBI | Feb. 2, 2023 |
Host Taxonomy
According to NCBI Taxonomy
| Assigned Host | Klebsiella pneumoniae (573) |
|---|
Lineage
| Superkingdom | Bacteria (2) |
|---|---|
| Phylum | Pseudomonadota (1224) |
| Class | Gammaproteobacteria (1236) |
| Order | Enterobacterales (91347) |
| Family | Enterobacteriaceae (543) |
| Genus | Klebsiella (570) |
| Species | Klebsiella_pneumoniae (573) |
| Strain |
Biosample
Curated Collection Information
| Accession | 31207046 |
|---|
PLASMID INFORMATION
GEOGRAPHICAL INFORMATION
| Original Query | China,Wuhan |
|---|---|
| Original Query Type | name |
| Coordinates (Lat/Lon) | 30.59/114.30 |
| Address | China,Wuhan |
ECOSYSTEM
| Original Query | Homo sapiens,sputum |
|---|---|
| Classification | host_associated,respiratory_system |
| Host-associated Taxon |
|
DISEASE
| Original Query | infection |
|---|---|
| DOID/SYMP |
|
Visualization
Plasmids from same Biosample
Similar Plasmids
based on Mash distance
Plasmid Visualization
Grays
Blues
Purples
Reds
Oranges
Greens
100
Hex
R
G
B
| Source | Element Name | Display | Sequence | Favorite |
|---|---|---|---|---|
| amrfinderplus | blaTEM-1 | copy | ||
| rgi | rmtB | copy | ||
| amrfinderplus | rmtB1 | copy | ||
| amrfinderplus | blaKPC-2 | copy | ||
| amrfinderplus | blaCTX-M-65 | copy | ||
| PGAG | IS6-like element IS26 family transposase | copy | ||
| PGAG | traI | copy | ||
| PGAG | traD | copy | ||
| PGAG | hypothetical protein | copy | ||
| PGAG | traT | copy | ||
| Source | Element Name | Display | Sequence | Favorite |
Showing 1 to 10 of 204 entries
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Annotations
based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
| NUCCORE ACC | Gene | Locus Tag | Product | Protein id | Codon Start | Translation Table | GO process |
|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Gene | Locus Tag | Product | Protein id | Codon Start | Translation Table | GO process |
Antimicrobial Resistance
based on NCBIAMRFinder and CARD
| NUCCORE ACC | Analysis Software Name | Reference Database Version | Gene Symbol | Gene Name | Drug Class | Antimicrobial Agent | Gene Start | Gene Stop | Gene Length | Strand Orientation | Sequence Identity (%) | Coverage (%) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Analysis Software Name | Reference Database Version | Gene Symbol | Gene Name | Drug Class | Antimicrobial Agent | Gene Start | Gene Stop | Gene Length | Strand Orientation | Sequence Identity (%) | Coverage (%) |
Typing
based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
| NUCCORE ACC | Replicon Type | Relaxase Type | MPF Type | OriT Type | Predicted Mobility | Primary Cluster ID | Secondary Cluster ID | Observed Host Range Ncbi Name | Mash Neighbor Distance | Reported Host Range Lit Rank |
|---|---|---|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Replicon Type | Relaxase Type | MPF Type | OriT Type | Predicted Mobility | Primary Cluster ID | Secondary Cluster ID | Observed Host Range Ncbi Name | Mash Neighbor Distance | Reported Host Range Lit Rank |
BLAST results of detected typing markers by MOB-type
| biomarker | MOB-suite ID | Element | Start | End | Strand | Identity | Coverage | Evalue | Bitscore |
|---|---|---|---|---|---|---|---|---|---|
| oriT | AP014804 | MOBP | 33205 | 33674 | minus | 88.494 | 85 | 4.93e-158 | 564 |
| replicon | MH263653_00001 | IncFIA | 76542 | 77297 | minus | 100 | 100 | 0 | 1397 |
| replicon | JN232517 | IncFII | 77397 | 77656 | plus | 100 | 100 | 2.26e-133 | 481 |
| replicon | 000204__CP008701_00115 | IncR | 97566 | 98461 | plus | 98.549 | 100 | 0 | 1581 |
| mate-pair-formation | 08-5333_00200 | MPF_Unknown | 5877 | 8099 | minus | 99.46 | 100 | 0 | 1466 |
| mate-pair-formation | NC_009837_00049 | MPF_F | 10421 | 13372 | minus | 90.365 | 99 | 0 | 1795 |
| mate-pair-formation | NC_009837_00049 | MPF_F | 13372 | 14586 | minus | 99.259 | 99 | 0 | 787 |
| mate-pair-formation | NC_019094_00068 | MPF_F | 17175 | 19022 | minus | 96.753 | 100 | 0 | 1157 |
| mate-pair-formation | NC_019037_00027 | MPF_F | 19838 | 20473 | minus | 92.925 | 100 | 5.37e-130 | 409 |
| mate-pair-formation | NC_017639_00100 | MPF_F | 21455 | 22411 | minus | 98.746 | 100 | 0 | 605 |
| biomarker | MOB-suite ID | Element | Start | End | Strand | Identity | Coverage | Evalue | Bitscore |
Showing 1 to 10 of 20 entries
Detected typing markers by plasmidfinder
| NUCCORE ACC | Typing | Identity | Coverage | Start | End | Strand | Organism L1 | Organism L2 |
|---|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Typing | Identity | Coverage | Start | End | Strand | Organism L1 | Organism L2 |