Plasmid NZ_CP147166.1

Sequence

Nucleotide Information

Accession NZ_CP147166.1
Description Klebsiella pneumoniae strain SC41 plasmid p1, complete sequence
Source refseq
Topology circular
Length 153960 bp
GC Content 0.53 %
Created at NCBI April 5, 2024



Assembly

Genome Data Information

Accession GCF_037157725.1
Assembly Coverage 100


Biosample

Curated Collection Information
Accession 40144598

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query 28.40N;121.26E
Original Query Type coordinates
Coordinates (Lat/Lon) 28.40/121.26
Address Wenling, Taizhou, Zhejiang, China

ECOSYSTEM
Original Query Homo sapiens,bronchoalveolar lavage fluid
Classification bronchi,host_associated,respiratory_system
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query chronic bronchitis
DOID/SYMP
  • Bronchitis (DOID:6132 )
    • A bronchial disease that is an inflammation of the bronchial tubes. It is caused by bacteria and viruses. The disease has_symptom cough with mucus, has_symptom shortness of breath, has_symptom low fever and has_symptom chest tightness.

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

CP043370.1 See Comparison
CP043366.1 See Comparison
NZ_CP043358.1 See Comparison
NZ_CP036301.1 See Comparison
NZ_CP033404.1 See Comparison
NZ_CP031720.1 See Comparison
NZ_CP026584.1 See Comparison
NZ_CP138529.1 See Comparison
CP137011.1 See Comparison
CP148997.1 See Comparison
NZ_CP127236.1 See Comparison
NZ_CP147152.1 See Comparison
NZ_CP147156.1 See Comparison
NZ_CP147180.1 See Comparison
NZ_CP066536.1 See Comparison
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NZ_CP066524.1 See Comparison
NZ_CP107515.1 See Comparison
NZ_CP107470.1 See Comparison
NZ_CP046963.1 See Comparison
NZ_CP107500.1 See Comparison
NZ_CP107480.1 See Comparison
NZ_CP107460.1 See Comparison
NZ_CP107404.1 See Comparison
CP046968.1 See Comparison
NZ_CP107475.1 See Comparison
NZ_CP107520.1 See Comparison
NZ_CP107360.1 See Comparison
NZ_CP107490.1 See Comparison
NZ_CP107505.1 See Comparison
NZ_CP107395.1 See Comparison
NZ_CP107510.1 See Comparison
NZ_CP107495.1 See Comparison
NZ_CP107449.1 See Comparison
NZ_CP107428.1 See Comparison
NZ_CP107391.1 See Comparison
NZ_CP107380.1 See Comparison
NZ_CP104031.1 See Comparison
NZ_CP107438.1 See Comparison
NZ_CP107423.1 See Comparison
NZ_CP107443.1 See Comparison
NZ_CP107485.1 See Comparison
NZ_CP097627.1 See Comparison
NZ_CP101727.1 See Comparison
NZ_CP036301.1 See Comparison
CP043603.1 See Comparison
CP043370.1 See Comparison
CP043366.1 See Comparison
NZ_CP043358.1 See Comparison
NZ_CP031720.1 See Comparison
NZ_CP033404.1 See Comparison
NZ_CP026584.1 See Comparison
NZ_CP147152.1 See Comparison
NZ_CP138529.1 See Comparison
CP137011.1 See Comparison
NZ_CP127236.1 See Comparison
NZ_CP147156.1 See Comparison
CP148997.1 See Comparison
NZ_CP147180.1 See Comparison
NZ_CP046963.1 See Comparison
NZ_CP066536.1 See Comparison
NZ_CP066524.1 See Comparison
NZ_CP039810.1 See Comparison
CP046968.1 See Comparison
NZ_CP107470.1 See Comparison
NZ_CP107480.1 See Comparison
NZ_CP107404.1 See Comparison
NZ_CP107510.1 See Comparison
NZ_CP107520.1 See Comparison
NZ_CP107360.1 See Comparison
NZ_CP107505.1 See Comparison
NZ_CP107515.1 See Comparison
NZ_CP107395.1 See Comparison
NZ_CP107500.1 See Comparison
NZ_CP107449.1 See Comparison
NZ_CP107460.1 See Comparison
NZ_CP107391.1 See Comparison
NZ_CP107380.1 See Comparison
NZ_CP107443.1 See Comparison
NZ_CP107438.1 See Comparison
NZ_CP107475.1 See Comparison
NZ_CP107485.1 See Comparison
NZ_CP107490.1 See Comparison
NZ_CP107423.1 See Comparison
NZ_CP043358.1 See Comparison
NZ_CP101727.1 See Comparison
CP043370.1 See Comparison
CP043366.1 See Comparison
NZ_CP107495.1 See Comparison
NZ_CP107428.1 See Comparison
NZ_CP104031.1 See Comparison
NZ_CP097627.1 See Comparison
CP043603.1 See Comparison
NZ_CP031720.1 See Comparison
NZ_CP036301.1 See Comparison
NZ_CP033404.1 See Comparison
NZ_CP026584.1 See Comparison
NZ_CP138529.1 See Comparison
CP137011.1 See Comparison
NZ_CP147152.1 See Comparison
NZ_CP127236.1 See Comparison
NZ_CP066536.1 See Comparison
NZ_CP147156.1 See Comparison
NZ_CP147180.1 See Comparison
CP148997.1 See Comparison
NZ_CP039810.1 See Comparison
NZ_CP066524.1 See Comparison
NZ_CP046963.1 See Comparison
CP046968.1 See Comparison
NZ_CP107500.1 See Comparison
NZ_CP107480.1 See Comparison
NZ_CP107460.1 See Comparison
NZ_CP107404.1 See Comparison
NZ_CP107475.1 See Comparison
NZ_CP107520.1 See Comparison
NZ_CP107360.1 See Comparison
NZ_CP107470.1 See Comparison
NZ_CP107495.1 See Comparison
NZ_CP107510.1 See Comparison
NZ_CP107449.1 See Comparison
NZ_CP107391.1 See Comparison
NZ_CP107443.1 See Comparison
NZ_CP107505.1 See Comparison
NZ_CP107515.1 See Comparison
NZ_CP107380.1 See Comparison
NZ_CP107428.1 See Comparison
NZ_CP107438.1 See Comparison
NZ_CP104031.1 See Comparison
NZ_CP107423.1 See Comparison
NZ_CP107490.1 See Comparison
NZ_CP107485.1 See Comparison
NZ_CP107395.1 See Comparison
NZ_CP097627.1 See Comparison
NZ_CP101727.1 See Comparison
NZ_CP033404.1 See Comparison
CP043366.1 See Comparison
CP043603.1 See Comparison
CP043370.1 See Comparison
NZ_CP043358.1 See Comparison
NZ_CP036301.1 See Comparison
NZ_CP147152.1 See Comparison
NZ_CP031720.1 See Comparison
NZ_CP026584.1 See Comparison
NZ_CP138529.1 See Comparison
CP137011.1 See Comparison
NZ_CP127236.1 See Comparison
NZ_CP147156.1 See Comparison
NZ_CP107480.1 See Comparison
NZ_CP147180.1 See Comparison
NZ_CP066536.1 See Comparison
NZ_CP066524.1 See Comparison
CP046968.1 See Comparison
CP148997.1 See Comparison
NZ_CP039810.1 See Comparison
NZ_CP107404.1 See Comparison
NZ_CP046963.1 See Comparison
NZ_CP107470.1 See Comparison
NZ_CP107520.1 See Comparison
NZ_CP107510.1 See Comparison
NZ_CP107449.1 See Comparison
NZ_CP107391.1 See Comparison
NZ_CP107443.1 See Comparison
NZ_CP107500.1 See Comparison
NZ_CP107460.1 See Comparison
NZ_CP107360.1 See Comparison
NZ_CP107475.1 See Comparison
NZ_CP107505.1 See Comparison
NZ_CP107515.1 See Comparison
NZ_CP107485.1 See Comparison
NZ_CP107380.1 See Comparison
NZ_CP107395.1 See Comparison
NZ_CP107428.1 See Comparison
NZ_CP107438.1 See Comparison
NZ_CP107423.1 See Comparison
NZ_CP107490.1 See Comparison
NZ_CP107495.1 See Comparison
NZ_CP101727.1 See Comparison
NZ_CP104031.1 See Comparison
NZ_CP033404.1 See Comparison
NZ_CP097627.1 See Comparison
CP043603.1 See Comparison
NZ_CP043358.1 See Comparison
CP043370.1 See Comparison
CP043366.1 See Comparison
NZ_CP036301.1 See Comparison
NZ_CP147152.1 See Comparison
NZ_CP147156.1 See Comparison
NZ_CP147180.1 See Comparison
NZ_CP031720.1 See Comparison
NZ_CP026584.1 See Comparison
NZ_CP138529.1 See Comparison
CP137011.1 See Comparison
NZ_CP127236.1 See Comparison
NZ_CP039810.1 See Comparison
CP148997.1 See Comparison
NZ_CP107480.1 See Comparison
NZ_CP066536.1 See Comparison
NZ_CP066524.1 See Comparison
NZ_CP107404.1 See Comparison
NZ_CP046963.1 See Comparison
CP046968.1 See Comparison
NZ_CP107520.1 See Comparison
NZ_CP107360.1 See Comparison
NZ_CP107470.1 See Comparison
NZ_CP107460.1 See Comparison
NZ_CP107505.1 See Comparison
NZ_CP107515.1 See Comparison
NZ_CP107475.1 See Comparison
NZ_CP107500.1 See Comparison
NZ_CP107449.1 See Comparison
NZ_CP107391.1 See Comparison
NZ_CP107380.1 See Comparison
NZ_CP107443.1 See Comparison
NZ_CP107438.1 See Comparison
NZ_CP107423.1 See Comparison
NZ_CP107485.1 See Comparison
NZ_CP107395.1 See Comparison
NZ_CP107510.1 See Comparison
NZ_CP107490.1 See Comparison
NZ_CP107495.1 See Comparison
NZ_CP107428.1 See Comparison
NZ_CP097627.1 See Comparison
NZ_CP104031.1 See Comparison
NZ_CP101727.1 See Comparison
CP043603.1 See Comparison
CP043370.1 See Comparison
NZ_CP031720.1 See Comparison
CP043366.1 See Comparison
NZ_CP043358.1 See Comparison
NZ_CP033404.1 See Comparison
NZ_CP036301.1 See Comparison
NZ_CP026584.1 See Comparison
NZ_CP138529.1 See Comparison
CP137011.1 See Comparison
NZ_CP039810.1 See Comparison
NZ_CP127236.1 See Comparison
NZ_CP147152.1 See Comparison
NZ_CP147166.1 See Comparison
NZ_CP147156.1 See Comparison
NZ_CP147180.1 See Comparison
CP148997.1 See Comparison
NZ_CP046963.1 See Comparison
NZ_CP066536.1 See Comparison
NZ_CP066524.1 See Comparison
NZ_CP107460.1 See Comparison
NZ_CP107404.1 See Comparison
CP046968.1 See Comparison
NZ_CP107475.1 See Comparison
NZ_CP107520.1 See Comparison
NZ_CP107360.1 See Comparison
NZ_CP107510.1 See Comparison
NZ_CP107505.1 See Comparison
NZ_CP107515.1 See Comparison
NZ_CP107500.1 See Comparison
NZ_CP107470.1 See Comparison
NZ_CP107480.1 See Comparison
NZ_CP107391.1 See Comparison
NZ_CP107449.1 See Comparison
NZ_CP107443.1 See Comparison
NZ_CP107438.1 See Comparison
NZ_CP107395.1 See Comparison
NZ_CP107423.1 See Comparison
NZ_CP107380.1 See Comparison
NZ_CP107485.1 See Comparison
NZ_CP107490.1 See Comparison
NZ_CP107495.1 See Comparison
NZ_CP107428.1 See Comparison
NZ_CP104031.1 See Comparison
NZ_CP101727.1 See Comparison
NZ_CP097627.1 See Comparison
CP043603.1 See Comparison


Identical Plasmids

100% Sequence Identity

  • Sequence
    • Accession: NZ_CP147180.1
    • Description: Klebsiella pneumoniae strain SC7 plasmid p1, complete sequence
    • Source: refseq
    • Created at NCBI: April 5, 2024

  • Host Taxonomy
    Assigned Host: Klebsiella pneumoniae (573)
  • Biosample
    Accession: 40144595
  • GEOGRAPHICAL INFORMATION
    • Original Query: 28.40N;121.26E
    • Original Query Type: coordinates
    • Address: Wenling, Taizhou, Zhejiang, China
    • Coordinates (Lat/Lon): 28.40/121.26
  • ECOSYSTEM
    • Original Query: Homo sapiens,bronchoalveolar lavage fluid
    • Classification: bronchi,host_associated,respiratory_system
    • Host-associated Taxon:
      • Homo sapiens (9606)
  • DISEASE
    • Original Query: community acquited pneumonia
    • DOID/SYMP:
      • Pneumonia (DOID:552 )
        • A lung disease that involves lung parenchyma or alveolar inflammation and abnormal alveolar filling with fluid (consolidation and exudation). It results from a variety of causes including infection with bacteria, viruses, fungi or parasites, and chemical or physical injury to the lungs. It is accompanied by fever, chills, cough, and difficulty in breathing.

    • Visualization

    PNG JSON

Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore