Plasmid NZ_CP107388.1
Sequence
Nucleotide Information
| Accession | NZ_CP107388.1 |
|---|---|
| Description | Klebsiella pneumoniae strain CRKP_29 plasmid unnamed5 |
| Source | refseq |
| Topology | linear |
| Length | 11940 bp |
| GC Content | 0.56 % |
| Created at NCBI | Feb. 2, 2023 |
Host Taxonomy
According to NCBI Taxonomy
| Assigned Host | Klebsiella pneumoniae (573) |
|---|
Lineage
| Superkingdom | Bacteria (2) |
|---|---|
| Phylum | Pseudomonadota (1224) |
| Class | Gammaproteobacteria (1236) |
| Order | Enterobacterales (91347) |
| Family | Enterobacteriaceae (543) |
| Genus | Klebsiella (570) |
| Species | Klebsiella_pneumoniae (573) |
| Strain |
Biosample
Curated Collection Information
| Accession | 31207058 |
|---|
PLASMID INFORMATION
GEOGRAPHICAL INFORMATION
| Original Query | China,Wuhan |
|---|---|
| Original Query Type | name |
| Coordinates (Lat/Lon) | 30.59/114.30 |
| Address | China,Wuhan |
ECOSYSTEM
| Original Query | Homo sapiens,sputum |
|---|---|
| Classification | host_associated,respiratory_system |
| Host-associated Taxon |
|
DISEASE
| Original Query | infection |
|---|---|
| DOID/SYMP |
|
Visualization
Plasmids from same Biosample
Similar Plasmids
based on Mash distance
Identical Plasmids
100% Sequence Identity
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Sequence
- Accession: NZ_CP107332.1
- Description: Klebsiella pneumoniae strain CRKP_39 plasmid unnamed5
- Source: refseq
- Created at NCBI: Feb. 2, 2023
-
Host Taxonomy
Assigned Host: Klebsiella pneumoniae (573)- Superkingdom : Bacteria (2)
- Phylum : Pseudomonadota (1224)
- Class : Gammaproteobacteria (1236)
- Order : Enterobacterales (91347)
- Family : Enterobacteriaceae (543)
- Genus : Klebsiella (570)
- Species : Klebsiella_pneumoniae (573)
- Strain:
-
Biosample
Accession: 31207068 - GEOGRAPHICAL INFORMATION
- Original Query: China,Wuhan
- Original Query Type: name
- Address: China,Wuhan
- Coordinates (Lat/Lon): 30.59/114.30
- ECOSYSTEM
- Original Query: Homo sapiens,sputum
- Classification: host_associated,respiratory_system
- Host-associated Taxon:
- Homo sapiens (9606)
- DISEASE
- Original Query: infection
- DOID/SYMP:
- Disease infectious agent (DOID:0050117 ) A disease that is the consequence of the presence of pathogenic microbial agents, including pathogenic viruses, pathogenic bacteria, fungi, protozoa, multicellular parasites, and aberrant proteins known as prions.
Visualization
Plasmid Visualization
Grays
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G
B
| Source | Element Name | Display | Sequence | Favorite |
|---|---|---|---|---|
| PGAG | hypothetical protein | copy | ||
| PGAG | tolA | copy | ||
| PGAG | TonB family protein | copy | ||
| PGAG | CopG family ribbon-helix-helix protein | copy | ||
| PGAG | type II toxin-antitoxin system RelE/ParE family toxin | copy | ||
| PGAG | hypothetical protein | copy | ||
| PGAG | Rop family plasmid primer RNA-binding protein | copy | ||
| PGAG | hypothetical protein | copy | ||
| PGAG | mobC | copy | ||
| PGAG | TraM recognition domain-containing protein | copy | ||
| Source | Element Name | Display | Sequence | Favorite |
Showing 1 to 10 of 17 entries
Annotations
based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
| NUCCORE ACC | Gene | Locus Tag | Product | Protein id | Codon Start | Translation Table | GO process |
|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Gene | Locus Tag | Product | Protein id | Codon Start | Translation Table | GO process |
Biosynthetic Gene Clusters
based on ANTISMASH
Typing
based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
| NUCCORE ACC | Replicon Type | Relaxase Type | MPF Type | OriT Type | Predicted Mobility | Primary Cluster ID | Secondary Cluster ID | Observed Host Range Ncbi Name | Mash Neighbor Distance | Reported Host Range Lit Rank |
|---|---|---|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Replicon Type | Relaxase Type | MPF Type | OriT Type | Predicted Mobility | Primary Cluster ID | Secondary Cluster ID | Observed Host Range Ncbi Name | Mash Neighbor Distance | Reported Host Range Lit Rank |
BLAST results of detected typing markers by MOB-type
| biomarker | MOB-suite ID | Element | Start | End | Strand | Identity | Coverage | Evalue | Bitscore |
|---|---|---|---|---|---|---|---|---|---|
| replicon | 000003__NC_002119_00001 | ColRNAI_rep_cluster_1857 | 7134 | 7713 | plus | 98.282 | 100 | 0 | 1018 |
| relaxase | NC_009793_00003 | MOBC | 3640 | 4368 | minus | 93.416 | 100 | 1.35e-140 | 441 |
| biomarker | MOB-suite ID | Element | Start | End | Strand | Identity | Coverage | Evalue | Bitscore |
Showing 1 to 2 of 2 entries
Detected typing markers by plasmidfinder
| NUCCORE ACC | Typing | Identity | Coverage | Start | End | Strand | Organism L1 | Organism L2 |
|---|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Typing | Identity | Coverage | Start | End | Strand | Organism L1 | Organism L2 |