Plasmid NZ_CP080301.1
Sequence
Nucleotide Information
| Accession | NZ_CP080301.1 |
|---|---|
| Description | Klebsiella pneumoniae strain KP-C76 plasmid pC76-coIRNAI, complete sequence |
| Source | refseq |
| Topology | circular |
| Length | 11970 bp |
| GC Content | 0.56 % |
| Created at NCBI | Aug. 4, 2021 |
Host Taxonomy
According to NCBI Taxonomy
| Assigned Host | Klebsiella pneumoniae (573) |
|---|
Lineage
| Superkingdom | Bacteria (2) |
|---|---|
| Phylum | Pseudomonadota (1224) |
| Class | Gammaproteobacteria (1236) |
| Order | Enterobacterales (91347) |
| Family | Enterobacteriaceae (543) |
| Genus | Klebsiella (570) |
| Species | Klebsiella_pneumoniae (573) |
| Strain |
Biosample
Curated Collection Information
| Accession | 20373014 |
|---|
PLASMID INFORMATION
GEOGRAPHICAL INFORMATION
| Original Query | China,Hangzhou |
|---|---|
| Original Query Type | name |
| Coordinates (Lat/Lon) | 30.25/120.21 |
| Address | China,Hangzhou |
ECOSYSTEM
| Original Query | Homo sapiens,mixed culture |
|---|---|
| Classification | cell_culture,host_associated |
| Host-associated Taxon |
|
DISEASE
| Original Query | None |
|---|---|
| DOID/SYMP |
Visualization
Plasmids from same Biosample
Similar Plasmids
based on Mash distance
Identical Plasmids
100% Sequence Identity
-
Sequence
- Accession: NZ_CP080314.1
- Description: Klebsiella pneumoniae strain KP-426 plasmid p426-colRNAI, complete sequence
- Source: refseq
- Created at NCBI: Aug. 4, 2021
-
Host Taxonomy
Assigned Host: Klebsiella pneumoniae (573)- Superkingdom : Bacteria (2)
- Phylum : Pseudomonadota (1224)
- Class : Gammaproteobacteria (1236)
- Order : Enterobacterales (91347)
- Family : Enterobacteriaceae (543)
- Genus : Klebsiella (570)
- Species : Klebsiella_pneumoniae (573)
- Strain:
-
Biosample
Accession: 20373013 - GEOGRAPHICAL INFORMATION
- Original Query: China,Hangzhou
- Original Query Type: name
- Address: China,Hangzhou
- Coordinates (Lat/Lon): 30.25/120.21
- ECOSYSTEM
- Original Query: Homo sapiens,mixed culture
- Classification: cell_culture,host_associated
- Host-associated Taxon:
- Homo sapiens (9606)
Visualization
-
Sequence
- Accession: NZ_CP069174.1
- Description: Klebsiella pneumoniae strain KPWX136 plasmid pE, complete sequence
- Source: refseq
- Created at NCBI: Feb. 11, 2021
-
Host Taxonomy
Assigned Host: Klebsiella pneumoniae (573)- Superkingdom : Bacteria (2)
- Phylum : Pseudomonadota (1224)
- Class : Gammaproteobacteria (1236)
- Order : Enterobacterales (91347)
- Family : Enterobacteriaceae (543)
- Genus : Klebsiella (570)
- Species : Klebsiella_pneumoniae (573)
- Strain:
-
Biosample
Accession: 17372728 - GEOGRAPHICAL INFORMATION
- Original Query: China,Jiangsu
- Original Query Type: name
- Address: China,Jiangsu
- Coordinates (Lat/Lon): 33.00/120.00
- ECOSYSTEM
- Original Query: Homo sapiens,whole organism,sputum
- Classification: host_associated,respiratory_system
- Host-associated Taxon:
- Homo sapiens (9606)
Visualization
Plasmid Visualization
Grays
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Greens
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Hex
R
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B
| Source | Element Name | Display | Sequence | Favorite |
|---|---|---|---|---|
| PGAG | mobC | copy | ||
| PGAG | hypothetical protein | copy | ||
| PGAG | Rop family plasmid primer RNA-binding protein | copy | ||
| PGAG | hypothetical protein | copy | ||
| PGAG | type II toxin-antitoxin system RelE/ParE family toxin | copy | ||
| PGAG | CopG family ribbon-helix-helix protein | copy | ||
| PGAG | TonB family protein | copy | ||
| PGAG | tolA | copy | ||
| PGAG | hypothetical protein | copy | ||
| PGAG | ltrA | copy | ||
| Source | Element Name | Display | Sequence | Favorite |
Showing 1 to 10 of 17 entries
Annotations
based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
| NUCCORE ACC | Gene | Locus Tag | Product | Protein id | Codon Start | Translation Table | GO process |
|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Gene | Locus Tag | Product | Protein id | Codon Start | Translation Table | GO process |
Biosynthetic Gene Clusters
based on ANTISMASH
Typing
based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
| NUCCORE ACC | Replicon Type | Relaxase Type | MPF Type | OriT Type | Predicted Mobility | Primary Cluster ID | Secondary Cluster ID | Observed Host Range Ncbi Name | Mash Neighbor Distance | Reported Host Range Lit Rank |
|---|---|---|---|---|---|---|---|---|---|---|
| Loading... | ||||||||||
| NUCCORE ACC | Replicon Type | Relaxase Type | MPF Type | OriT Type | Predicted Mobility | Primary Cluster ID | Secondary Cluster ID | Observed Host Range Ncbi Name | Mash Neighbor Distance | Reported Host Range Lit Rank |
BLAST results of detected typing markers by MOB-type
| biomarker | MOB-suite ID | Element | Start | End | Strand | Identity | Coverage | Evalue | Bitscore |
|---|---|---|---|---|---|---|---|---|---|
| relaxase | NC_009793_00003 | MOBC | 11241 | 11969 | plus | 93.416 | 100 | 1.35e-140 | 441 |
| replicon | 000003__NC_002119_00001 | ColRNAI_rep_cluster_1857 | 7896 | 8475 | minus | 98.282 | 100 | 0 | 1018 |
| biomarker | MOB-suite ID | Element | Start | End | Strand | Identity | Coverage | Evalue | Bitscore |
Showing 1 to 2 of 2 entries
Detected typing markers by plasmidfinder
| NUCCORE ACC | Typing | Identity | Coverage | Start | End | Strand | Organism L1 | Organism L2 |
|---|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Typing | Identity | Coverage | Start | End | Strand | Organism L1 | Organism L2 |