Plasmid NZ_CP104631.1

Sequence

Nucleotide Information

Accession NZ_CP104631.1
Description Escherichia coli strain AHM21C2872I plasmid pHNAH212872-1, complete sequence
Source refseq
Topology circular
Length 130125 bp
GC Content 0.50 %
Created at NCBI June 7, 2023



Assembly

Genome Data Information

Accession GCF_030169635.1
Assembly Coverage 200


Biosample

Curated Collection Information
Accession 30667245

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query China
Original Query Type name
Coordinates (Lat/Lon) 34.41/86.03
Address China

ECOSYSTEM
Original Query cell culture,In-house environment
Classification anthropogenic,cell_culture,construction
Host-associated Taxon

DISEASE
Original Query None
DOID/SYMP

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

NZ_CP104631.1 See Comparison


Plasmid Visualization

JSON GENBANK

SourceElement Name Display Sequence Favorite
amrfinderplusmerTcopy
amrfinderplusmerCcopy
amrfinderplusisscopy
amrfinderplusiroNcopy
amrfinderplusiroEcopy
amrfinderplusiroDcopy
amrfinderplusiroCcopy
amrfinderplusiroBcopy
amrfinderplusbleOcopy
PGAGRepB family plasmid replication initiator proteincopy
SourceElement NameDisplaySequenceFavorite
Showing 1 to 10 of 144 entries
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Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process
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NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD
NUCCORE ACCAnalysis Software NameReference Database VersionGene SymbolGene NameDrug ClassAntimicrobial AgentGene StartGene StopGene LengthStrand OrientationSequence Identity (%)Coverage (%)
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NUCCORE ACCAnalysis Software NameReference Database VersionGene SymbolGene NameDrug ClassAntimicrobial AgentGene StartGene StopGene LengthStrand OrientationSequence Identity (%)Coverage (%)



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACCReplicon TypeRelaxase TypeMPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank
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NUCCORE ACCReplicon TypeRelaxase TypeMPF TypeOriT TypePredicted MobilityPrimary Cluster IDSecondary Cluster IDObserved Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank




BLAST results of detected typing markers by MOB-type
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
oriTCP015086MOBF9803098499minus89.749854.86e-168597
replicon000095__NZ_CP014273_00094IncFIB1978plus98.56910001729
repliconCP033091_00053rep_cluster_22445271553572plus97.08610001424
relaxaseNC_017627_00068MOBF6741372179minus96.4769003053
mate-pair-formation08-5333_00200MPF_Unknown7218274377minus98.50910001460
mate-pair-formationNC_009837_00049MPF_F7593578889minus95.0359901869
mate-pair-formationNC_009837_00049MPF_F7888980103minus98.765990783
mate-pair-formationNC_010488_00021MPF_F8271684521minus10010001187
mate-pair-formationNC_018966_00040MPF_F8452185105minus97.436923.6499999999999996e-124393
mate-pair-formationNC_017639_00100MPF_F8618987145minus99.061000607
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
Showing 1 to 10 of 17 entries


Detected typing markers by plasmidfinder
NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2
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NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2