Plasmid NZ_CP103652.1

Sequence

Nucleotide Information

Accession	NZ_CP103652.1
Description	Escherichia coli strain 961 plasmid pMB5823_7, complete sequence
Source	refseq
Topology	circular
Length	2088 bp
GC Content	0.47 %
Created at NCBI	Sept. 6, 2022

Host Taxonomy

According to NCBI Taxonomy

Assigned Host	Escherichia coli (562)

Lineage

Superkingdom	Bacteria (2)
Phylum	Pseudomonadota (1224)
Class	Gammaproteobacteria (1236)
Order	Enterobacterales (91347)
Family	Enterobacteriaceae (543)
Genus	Escherichia (561)
Species	Escherichia_coli (562)
Strain

Assembly

Genome Data Information

Accession	GCF_024918295.1
Assembly Coverage	61

Biosample

Curated Collection Information

Accession	28173990

PLASMID INFORMATION

Genotype	ST617

GEOGRAPHICAL INFORMATION

Original Query	29.7068N;95.3971W
Original Query Type	coordinates
Coordinates (Lat/Lon)	29.71/-95.40
Address	University of Texas MD Anderson Cancer Center, 1515, Holcombe Boulevard, Texas Medical Center, Houston, Harris County, Texas, 77030, United States

ECOSYSTEM

Original Query	Homo sapiens,blood
Classification	blood,circulatory_system,host_associated
Host-associated Taxon	Homo sapiens (9606)

DISEASE

Original Query	Bacteremia
DOID/SYMP	Bacterial infectious disease (DOID:104 ) A disease by infectious agent that results_in infection, has_material_basis_in Bacteria. Has_material_basis_in: ['bacteria']

Visualization

Plasmids from same Biosample

Similar Plasmids

based on Mash distance

NZ_OW967804.1	See Comparison
NZ_CP043341.1	See Comparison
NZ_CP082126.1	See Comparison
NZ_CP085191.1	See Comparison
NZ_CP048348.1	See Comparison
NZ_CP081310.1	See Comparison
NZ_CP080374.1	See Comparison
NZ_CP048919.1	See Comparison
NZ_CP033398.1	See Comparison
NZ_CP027201.2	See Comparison
NZ_CP024803.1	See Comparison
NZ_CP123022.1	See Comparison
NZ_LR595694.1	See Comparison
NZ_CP034955.1	See Comparison
NZ_CP129244.1	See Comparison
NZ_CP123039.1	See Comparison
NZ_CP123034.1	See Comparison
NZ_CP123016.1	See Comparison
NZ_CP123027.1	See Comparison
NZ_CP048378.1	See Comparison
NZ_CP048013.1	See Comparison
NZ_CP085191.1	See Comparison
NZ_OW967804.1	See Comparison
NZ_CP043341.1	See Comparison
NZ_CP082126.1	See Comparison
NZ_CP129244.1	See Comparison
NZ_CP081310.1	See Comparison
NZ_CP080374.1	See Comparison
NZ_CP048919.1	See Comparison
NZ_CP027201.2	See Comparison
NZ_CP024803.1	See Comparison
NZ_LR595694.1	See Comparison
NZ_CP034955.1	See Comparison
NZ_CP033398.1	See Comparison
NZ_CP048348.1	See Comparison
NZ_CP123039.1	See Comparison
NZ_CP123034.1	See Comparison
NZ_CP123016.1	See Comparison
NZ_CP123027.1	See Comparison
NZ_CP123022.1	See Comparison
NZ_CP048378.1	See Comparison
NZ_CP043341.1	See Comparison
NZ_CP048013.1	See Comparison
NZ_OW967804.1	See Comparison
NZ_CP081310.1	See Comparison
NZ_CP085191.1	See Comparison
NZ_CP080374.1	See Comparison
NZ_CP082126.1	See Comparison
NZ_CP048919.1	See Comparison
NZ_CP027201.2	See Comparison
NZ_LR595694.1	See Comparison
NZ_CP034955.1	See Comparison
NZ_CP024803.1	See Comparison
NZ_CP033398.1	See Comparison
NZ_CP129244.1	See Comparison
NZ_CP043341.1	See Comparison
NZ_CP123039.1	See Comparison
NZ_CP123034.1	See Comparison
NZ_CP123016.1	See Comparison
NZ_CP123027.1	See Comparison
NZ_CP123022.1	See Comparison
NZ_CP048348.1	See Comparison
NZ_CP048378.1	See Comparison
NZ_CP048013.1	See Comparison
NZ_CP103652.1	See Comparison
NZ_OW967804.1	See Comparison
NZ_LR595694.1	See Comparison
NZ_CP082126.1	See Comparison
NZ_CP085191.1	See Comparison
NZ_CP081310.1	See Comparison
NZ_CP080374.1	See Comparison
NZ_CP048919.1	See Comparison
NZ_CP024803.1	See Comparison
NZ_CP034955.1	See Comparison
NZ_CP033398.1	See Comparison
NZ_CP027201.2	See Comparison
NZ_CP123039.1	See Comparison
NZ_CP129244.1	See Comparison
NZ_CP123034.1	See Comparison
NZ_CP123016.1	See Comparison
NZ_CP123027.1	See Comparison
NZ_CP123022.1	See Comparison
NZ_CP081310.1	See Comparison
NZ_CP048348.1	See Comparison
NZ_CP048378.1	See Comparison
NZ_CP048013.1	See Comparison
NZ_OW967804.1	See Comparison
NZ_CP043341.1	See Comparison
NZ_CP085191.1	See Comparison
NZ_CP082126.1	See Comparison
NZ_CP080374.1	See Comparison
NZ_CP034955.1	See Comparison
NZ_LR595694.1	See Comparison
NZ_CP048919.1	See Comparison
NZ_CP033398.1	See Comparison
NZ_CP027201.2	See Comparison
NZ_CP024803.1	See Comparison
NZ_CP123039.1	See Comparison
NZ_CP129244.1	See Comparison
NZ_CP123034.1	See Comparison
NZ_CP123016.1	See Comparison
NZ_CP123027.1	See Comparison
NZ_CP123022.1	See Comparison
NZ_CP048013.1	See Comparison
NZ_CP048348.1	See Comparison
NZ_CP048378.1	See Comparison
NZ_CP081310.1	See Comparison
NZ_OW967804.1	See Comparison
NZ_CP043341.1	See Comparison
NZ_CP085191.1	See Comparison
NZ_CP082126.1	See Comparison
NZ_CP080374.1	See Comparison
NZ_CP048919.1	See Comparison
NZ_CP034955.1	See Comparison
NZ_LR595694.1	See Comparison
NZ_CP033398.1	See Comparison
NZ_CP027201.2	See Comparison
NZ_CP123039.1	See Comparison
NZ_CP024803.1	See Comparison
NZ_CP129244.1	See Comparison
NZ_CP123034.1	See Comparison
NZ_CP123016.1	See Comparison
NZ_CP123027.1	See Comparison
NZ_CP123022.1	See Comparison
NZ_CP048378.1	See Comparison
NZ_CP048013.1	See Comparison
NZ_CP048348.1	See Comparison

Plasmid Visualization

NUCCORE ACC	Source	Element Name	Display	Sequence	Favorite
NUCCORE ACC	Source	Element Name	Display	Sequence	Favorite

Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)

NUCCORE ACC	Gene	Locus Tag	Product	Protein id	Codon Start	Translation Table	GO process
NUCCORE ACC	Gene	Locus Tag	Product	Protein id	Codon Start	Translation Table	GO process

Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)

NUCCORE ACC	Contigs	md5 hash	Replicon Type	Relaxase Type	MPF Type	OriT Type	Predicted Mobility	Primary Cluster ID	Secondary Cluster ID	Observed Host Range Ncbi Rank	Observed Host Range Ncbi Name	Mash Nearest Neighbor	Mash Neighbor Distance	Mash Neighbor Identification	Reported Host Range Lit Rank	Reported Host Range Lit Name	Replicon Type Accession	Relaxase Type Accession	MPF Type Accession	OriT Type Accession	Associated PMID(s)
NUCCORE ACC	Contigs	md5 hash	Replicon Type	Relaxase Type	MPF Type	OriT Type	Predicted Mobility	Primary Cluster ID	Secondary Cluster ID	Observed Host Range Ncbi Rank	Observed Host Range Ncbi Name	Mash Nearest Neighbor	Mash Neighbor Distance	Mash Neighbor Identification	Reported Host Range Lit Rank	Reported Host Range Lit Name	Replicon Type Accession	Relaxase Type Accession	MPF Type Accession	OriT Type Accession	Associated PMID(s)

BLAST results of detected typing markers by MOB-type

NUCCORE ACC	biomarker	MOB-suite ID	Element	Start	End	Strand	Identity	Coverage	Evalue	Bitscore
NUCCORE ACC	biomarker	MOB-suite ID	Element	Start	End	Strand	Identity	Coverage	Evalue	Bitscore