Plasmid NZ_CP048013.1

Sequence

Nucleotide Information

Accession NZ_CP048013.1
Description Escherichia coli strain RUT3575 plasmid p3575-5, complete sequence
Source refseq
Topology circular
Length 2088 bp
GC Content 0.47 %
Created at NCBI Feb. 9, 2021



Assembly

Genome Data Information

Accession GCF_016803855.1
Assembly Coverage 64


Biosample

Curated Collection Information
Accession 13031455

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query 41.43N;2.14E
Original Query Type coordinates
Coordinates (Lat/Lon) 41.43/2.14
Address Carrer de Vayreda, Montbau, Horta-Guinardó, Barcelona, Barcelonès, Barcelona, Catalonia, 08001, Spain

ECOSYSTEM
Original Query Homo sapiens,Rectal swab of patient hospitalized for an unrelated disease
Classification disease,gastrointestinal_system,host_associated,rectal
Host-associated Taxon
  • Homo sapiens (9606)
Host-associated Age 63
Host-associated Sex male

DISEASE
Original Query Human carrier
DOID/SYMP
  • Disease (DOID:4 )
    • A disease is a disposition (i) to undergo pathological processes that (ii) exists in an organism because of one or more disorders in that organism.

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

NZ_CP034955.1 See Comparison
NZ_CP033398.1 See Comparison
NZ_CP027201.2 See Comparison
NZ_CP024803.1 See Comparison
NZ_CP129244.1 See Comparison
NZ_CP123039.1 See Comparison
NZ_CP123034.1 See Comparison
NZ_CP123016.1 See Comparison
NZ_CP123027.1 See Comparison
NZ_CP123022.1 See Comparison
NZ_OW967804.1 See Comparison
NZ_CP103652.1 See Comparison
NZ_CP048348.1 See Comparison
NZ_CP048378.1 See Comparison
NZ_CP081310.1 See Comparison
NZ_CP082126.1 See Comparison
NZ_CP043341.1 See Comparison
NZ_CP085191.1 See Comparison
NZ_CP080374.1 See Comparison
NZ_LR595694.1 See Comparison
NZ_CP048919.1 See Comparison
NZ_CP082126.1 See Comparison
NZ_CP034955.1 See Comparison
NZ_CP033398.1 See Comparison
NZ_CP027201.2 See Comparison
NZ_CP024803.1 See Comparison
NZ_CP129244.1 See Comparison
NZ_OW967804.1 See Comparison
NZ_CP123039.1 See Comparison
NZ_CP123034.1 See Comparison
NZ_CP123016.1 See Comparison
NZ_CP123027.1 See Comparison
NZ_CP123022.1 See Comparison
NZ_CP048348.1 See Comparison
NZ_CP048378.1 See Comparison
NZ_CP103652.1 See Comparison
NZ_CP043341.1 See Comparison
NZ_CP085191.1 See Comparison
NZ_LR595694.1 See Comparison
NZ_CP048919.1 See Comparison
NZ_CP081310.1 See Comparison
NZ_CP080374.1 See Comparison
NZ_CP082126.1 See Comparison
NZ_CP123039.1 See Comparison
NZ_CP123034.1 See Comparison
NZ_CP123016.1 See Comparison
NZ_CP123027.1 See Comparison
NZ_CP123022.1 See Comparison
NZ_CP048348.1 See Comparison
NZ_CP048378.1 See Comparison
NZ_OW967804.1 See Comparison
NZ_CP034955.1 See Comparison
NZ_CP033398.1 See Comparison
NZ_CP027201.2 See Comparison
NZ_CP024803.1 See Comparison
NZ_CP129244.1 See Comparison
NZ_CP103652.1 See Comparison
NZ_CP043341.1 See Comparison
NZ_CP085191.1 See Comparison
NZ_CP129244.1 See Comparison
NZ_CP048919.1 See Comparison
NZ_CP034955.1 See Comparison
NZ_CP033398.1 See Comparison
NZ_CP027201.2 See Comparison
NZ_CP024803.1 See Comparison
NZ_CP081310.1 See Comparison
NZ_CP080374.1 See Comparison
NZ_LR595694.1 See Comparison
NZ_CP103652.1 See Comparison
NZ_CP048013.1 See Comparison
NZ_CP123039.1 See Comparison
NZ_CP123034.1 See Comparison
NZ_CP123016.1 See Comparison
NZ_CP123027.1 See Comparison
NZ_CP123022.1 See Comparison
NZ_CP048348.1 See Comparison
NZ_CP048378.1 See Comparison
NZ_OW967804.1 See Comparison
NZ_CP043341.1 See Comparison
NZ_CP082126.1 See Comparison
NZ_CP085191.1 See Comparison
NZ_CP027201.2 See Comparison
NZ_CP048919.1 See Comparison
NZ_CP081310.1 See Comparison
NZ_CP080374.1 See Comparison
NZ_LR595694.1 See Comparison
NZ_CP034955.1 See Comparison
NZ_CP048378.1 See Comparison
NZ_CP033398.1 See Comparison
NZ_CP024803.1 See Comparison
NZ_CP129244.1 See Comparison
NZ_CP123039.1 See Comparison
NZ_CP123034.1 See Comparison
NZ_CP123016.1 See Comparison
NZ_CP123027.1 See Comparison
NZ_CP123022.1 See Comparison
NZ_CP085191.1 See Comparison
NZ_CP048348.1 See Comparison
NZ_CP103652.1 See Comparison
NZ_OW967804.1 See Comparison
NZ_CP043341.1 See Comparison
NZ_CP082126.1 See Comparison
NZ_CP081310.1 See Comparison
NZ_CP027201.2 See Comparison
NZ_CP080374.1 See Comparison
NZ_CP048919.1 See Comparison
NZ_LR595694.1 See Comparison
NZ_CP034955.1 See Comparison
NZ_CP024803.1 See Comparison
NZ_CP033398.1 See Comparison
NZ_CP129244.1 See Comparison
NZ_CP123039.1 See Comparison
NZ_CP123034.1 See Comparison
NZ_CP123016.1 See Comparison
NZ_CP123027.1 See Comparison
NZ_CP123022.1 See Comparison
NZ_CP048348.1 See Comparison
NZ_CP048378.1 See Comparison
NZ_CP103652.1 See Comparison
NZ_OW967804.1 See Comparison
NZ_CP082126.1 See Comparison
NZ_CP043341.1 See Comparison
NZ_CP085191.1 See Comparison
NZ_CP081310.1 See Comparison
NZ_CP080374.1 See Comparison
NZ_CP048919.1 See Comparison
NZ_LR595694.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore