Plasmid NZ_CP103546.1

Sequence

Nucleotide Information

Accession NZ_CP103546.1
Description Escherichia coli strain 3036 plasmid pMB9029_2, complete sequence
Source refseq
Topology circular
Length 98998 bp
GC Content 0.50 %
Created at NCBI Sept. 6, 2022



Assembly

Genome Data Information

Accession GCF_024918035.1
Assembly Coverage 254


Biosample

Curated Collection Information
Accession 28174012

PLASMID INFORMATION
Genotype ST155

GEOGRAPHICAL INFORMATION
Original Query 29.7068N;95.3971W
Original Query Type coordinates
Coordinates (Lat/Lon) 29.71/-95.40
Address University of Texas MD Anderson Cancer Center, 1515, Holcombe Boulevard, Texas Medical Center, Houston, Harris County, Texas, 77030, United States

ECOSYSTEM
Original Query Homo sapiens,blood
Classification blood,circulatory_system,host_associated
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query Bacteremia
DOID/SYMP
  • Bacterial infectious disease (DOID:104 )
    • A disease by infectious agent that results_in infection, has_material_basis_in Bacteria.
    • Has_material_basis_in: ['bacteria']

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

NZ_CP146669.1 See Comparison
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NZ_MH472638.1 See Comparison
CP048295.1 See Comparison
NZ_CP051343.1 See Comparison
CP082694.1 See Comparison
CP090403.1 See Comparison
NZ_MW052848.1 See Comparison
NZ_MW052849.1 See Comparison
NZ_MW052847.1 See Comparison
NZ_CP051312.1 See Comparison
NZ_CP051405.1 See Comparison
NZ_CP051314.1 See Comparison
CP119489.1 See Comparison
CP092323.1 See Comparison
CP082656.1 See Comparison
CP082435.1 See Comparison
CP082504.1 See Comparison
CP082534.1 See Comparison
CP082560.1 See Comparison
CP082563.1 See Comparison
CP082507.1 See Comparison
CP082497.1 See Comparison
CP082717.1 See Comparison
CP082705.1 See Comparison
CP082604.1 See Comparison
NZ_CP012936.1 See Comparison
NZ_CP016568.1 See Comparison
NZ_CP016572.1 See Comparison
NZ_CP016516.1 See Comparison
NZ_CP016522.1 See Comparison
NZ_CP047012.1 See Comparison
NZ_CP012923.1 See Comparison
NZ_CP028315.1 See Comparison
HG428759.1 See Comparison
NZ_CP044183.1 See Comparison
NZ_CP146252.1 See Comparison
NZ_CP032264.1 See Comparison
NZ_CP027127.1 See Comparison
NZ_CP022064.1 See Comparison
NZ_CP128262.1 See Comparison
NZ_CP030025.1 See Comparison
NZ_CP146669.1 See Comparison
CP048295.1 See Comparison
NZ_MH472638.1 See Comparison
NZ_CP051343.1 See Comparison
NZ_CP051312.1 See Comparison
NZ_CP051405.1 See Comparison
NZ_CP051314.1 See Comparison
CP119489.1 See Comparison
CP092323.1 See Comparison
CP090403.1 See Comparison
NZ_MW052848.1 See Comparison
NZ_MW052849.1 See Comparison
NZ_MW052847.1 See Comparison
NZ_CP103546.1 See Comparison
CP082694.1 See Comparison
CP082656.1 See Comparison
CP082435.1 See Comparison
CP082504.1 See Comparison
CP082507.1 See Comparison
CP082497.1 See Comparison
CP082534.1 See Comparison
CP082717.1 See Comparison
CP082560.1 See Comparison
CP082705.1 See Comparison
CP082604.1 See Comparison
NZ_CP012936.1 See Comparison
CP082563.1 See Comparison
NZ_CP047012.1 See Comparison
NZ_CP016568.1 See Comparison
NZ_CP016572.1 See Comparison
NZ_CP016516.1 See Comparison
NZ_CP016522.1 See Comparison
NZ_CP012923.1 See Comparison
NZ_CP044183.1 See Comparison
HG428759.1 See Comparison
NZ_CP030025.1 See Comparison
NZ_CP028315.1 See Comparison
NZ_CP032264.1 See Comparison
NZ_CP027127.1 See Comparison
NZ_CP022064.1 See Comparison
NZ_CP128262.1 See Comparison
NZ_CP146669.1 See Comparison
CP048295.1 See Comparison
NZ_CP146252.1 See Comparison
NZ_MH472638.1 See Comparison
CP082504.1 See Comparison
NZ_CP051343.1 See Comparison
CP119489.1 See Comparison
CP090403.1 See Comparison
CP092323.1 See Comparison
NZ_CP051312.1 See Comparison
NZ_CP051405.1 See Comparison
NZ_CP051314.1 See Comparison
NZ_MW052848.1 See Comparison
NZ_MW052849.1 See Comparison
NZ_MW052847.1 See Comparison
CP082507.1 See Comparison
CP082497.1 See Comparison
CP082717.1 See Comparison
CP082705.1 See Comparison
CP082604.1 See Comparison
NZ_CP012936.1 See Comparison
CP082534.1 See Comparison
CP082560.1 See Comparison
CP082563.1 See Comparison
CP082694.1 See Comparison
CP082656.1 See Comparison
CP082435.1 See Comparison
NZ_CP047012.1 See Comparison
NZ_CP016568.1 See Comparison
NZ_CP016572.1 See Comparison
NZ_CP016516.1 See Comparison
NZ_CP016522.1 See Comparison
NZ_CP012923.1 See Comparison
HG428759.1 See Comparison
NZ_CP051312.1 See Comparison
NZ_CP030025.1 See Comparison
NZ_CP027127.1 See Comparison
NZ_CP022064.1 See Comparison
CP048295.1 See Comparison
NZ_CP044183.1 See Comparison
NZ_CP028315.1 See Comparison
NZ_CP032264.1 See Comparison
NZ_CP128262.1 See Comparison
NZ_CP146669.1 See Comparison
NZ_CP146252.1 See Comparison
NZ_MH472638.1 See Comparison
NZ_CP051343.1 See Comparison
NZ_CP051405.1 See Comparison
NZ_CP051314.1 See Comparison
CP090403.1 See Comparison
CP119489.1 See Comparison
CP092323.1 See Comparison
NZ_MW052848.1 See Comparison
NZ_MW052849.1 See Comparison
NZ_MW052847.1 See Comparison
CP082534.1 See Comparison
CP082560.1 See Comparison
CP082563.1 See Comparison
CP082694.1 See Comparison
CP082656.1 See Comparison
CP082507.1 See Comparison
CP082435.1 See Comparison
CP082497.1 See Comparison
CP082717.1 See Comparison
CP082705.1 See Comparison
CP082604.1 See Comparison
CP082504.1 See Comparison
NZ_CP016568.1 See Comparison
NZ_CP047012.1 See Comparison
NZ_CP016572.1 See Comparison
NZ_CP016516.1 See Comparison
NZ_CP016522.1 See Comparison
NZ_CP030025.1 See Comparison
NZ_CP044183.1 See Comparison
NZ_CP012936.1 See Comparison
NZ_CP012923.1 See Comparison
HG428759.1 See Comparison
NZ_CP028315.1 See Comparison
NZ_CP032264.1 See Comparison
CP082534.1 See Comparison
NZ_CP128262.1 See Comparison
NZ_CP146669.1 See Comparison
NZ_CP146252.1 See Comparison
NZ_MH472638.1 See Comparison
CP048295.1 See Comparison
NZ_CP051312.1 See Comparison
NZ_CP051405.1 See Comparison
NZ_CP051314.1 See Comparison
NZ_CP027127.1 See Comparison
NZ_CP022064.1 See Comparison
NZ_CP051343.1 See Comparison
CP119489.1 See Comparison
CP090403.1 See Comparison
NZ_MW052848.1 See Comparison
NZ_MW052849.1 See Comparison
NZ_MW052847.1 See Comparison
CP092323.1 See Comparison
CP082560.1 See Comparison
CP082563.1 See Comparison
CP082694.1 See Comparison
CP082656.1 See Comparison
CP082435.1 See Comparison
CP082504.1 See Comparison
CP082507.1 See Comparison
CP082497.1 See Comparison
CP082717.1 See Comparison
CP082705.1 See Comparison
CP082604.1 See Comparison
NZ_CP012936.1 See Comparison
NZ_CP047012.1 See Comparison
NZ_CP012923.1 See Comparison
HG428759.1 See Comparison
NZ_CP016568.1 See Comparison
NZ_CP016572.1 See Comparison
NZ_CP016516.1 See Comparison
NZ_CP016522.1 See Comparison
NZ_CP044183.1 See Comparison
CP082534.1 See Comparison
NZ_CP028315.1 See Comparison
NZ_CP032264.1 See Comparison
NZ_CP027127.1 See Comparison
NZ_CP128262.1 See Comparison
NZ_CP146669.1 See Comparison
NZ_CP146252.1 See Comparison
NZ_CP051343.1 See Comparison
NZ_CP051312.1 See Comparison
NZ_CP051405.1 See Comparison
NZ_CP051314.1 See Comparison
NZ_CP030025.1 See Comparison
NZ_CP022064.1 See Comparison
NZ_MH472638.1 See Comparison
CP048295.1 See Comparison
CP119489.1 See Comparison
CP090403.1 See Comparison
NZ_MW052848.1 See Comparison
NZ_MW052849.1 See Comparison
NZ_MW052847.1 See Comparison
CP092323.1 See Comparison
CP082560.1 See Comparison
CP082563.1 See Comparison
CP082694.1 See Comparison
CP082656.1 See Comparison
CP082435.1 See Comparison
CP082504.1 See Comparison
CP082507.1 See Comparison
CP082497.1 See Comparison
CP082717.1 See Comparison
CP082705.1 See Comparison
CP082604.1 See Comparison
NZ_CP044183.1 See Comparison
NZ_CP047012.1 See Comparison
NZ_CP016516.1 See Comparison
NZ_CP016522.1 See Comparison
NZ_CP012936.1 See Comparison
NZ_CP012923.1 See Comparison
NZ_CP016568.1 See Comparison
NZ_CP016572.1 See Comparison
HG428759.1 See Comparison
NZ_CP028315.1 See Comparison
NZ_CP030025.1 See Comparison
NZ_CP032264.1 See Comparison
NZ_CP022064.1 See Comparison
NZ_CP027127.1 See Comparison
NZ_CP128262.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore