Plasmid CP082560.1

Sequence

Nucleotide Information

Accession CP082560.1
Description Salmonella enterica subsp. enterica serovar Typhimurium strain CVM N18S1595 plasmid pN18S1595-1, complete sequence
Source insd
Topology circular
Length 102421 bp
GC Content 0.50 %
Created at NCBI Aug. 30, 2021



Assembly

Genome Data Information

Accession GCA_007861865.2
Assembly Coverage 414


Biosample

Curated Collection Information
Accession 12360196

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query USA,TN
Original Query Type name
Coordinates (Lat/Lon) 35.77/-86.28
Address USA,TN

ECOSYSTEM
Original Query Chicken Wings
Classification food,meat
Host-associated Taxon

DISEASE
Original Query None
DOID/SYMP

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

NZ_CP146252.1 See Comparison
CP082507.1 See Comparison
CP119489.1 See Comparison
NZ_CP103546.1 See Comparison
NZ_MW052848.1 See Comparison
NZ_MW052849.1 See Comparison
NZ_MW052847.1 See Comparison
CP082717.1 See Comparison
CP082560.1 See Comparison
CP082604.1 See Comparison
CP082563.1 See Comparison
CP082563.1 See Comparison
CP082656.1 See Comparison
NZ_CP146252.1 See Comparison
CP119489.1 See Comparison
NZ_CP103546.1 See Comparison
NZ_MW052848.1 See Comparison
NZ_MW052849.1 See Comparison
NZ_MW052847.1 See Comparison
NZ_CP047012.1 See Comparison
NZ_CP016568.1 See Comparison
NZ_CP016572.1 See Comparison
NZ_CP016516.1 See Comparison
CP082656.1 See Comparison
CP082507.1 See Comparison
CP082717.1 See Comparison
CP082604.1 See Comparison
NZ_CP016568.1 See Comparison
NZ_CP047012.1 See Comparison
NZ_CP016572.1 See Comparison
NZ_CP016516.1 See Comparison
CP119489.1 See Comparison
NZ_CP146252.1 See Comparison
NZ_MW052848.1 See Comparison
NZ_CP103546.1 See Comparison
NZ_MW052849.1 See Comparison
NZ_MW052847.1 See Comparison
NZ_CP016568.1 See Comparison
CP082563.1 See Comparison
CP082656.1 See Comparison
NZ_CP047012.1 See Comparison
NZ_CP016572.1 See Comparison
NZ_CP016516.1 See Comparison
NZ_CP146252.1 See Comparison
CP082507.1 See Comparison
CP082717.1 See Comparison
CP082604.1 See Comparison
CP119489.1 See Comparison
NZ_CP103546.1 See Comparison
NZ_CP146252.1 See Comparison
NZ_MW052848.1 See Comparison
NZ_MW052849.1 See Comparison
NZ_MW052847.1 See Comparison
NZ_CP016568.1 See Comparison
NZ_CP016572.1 See Comparison
NZ_CP016516.1 See Comparison
CP082563.1 See Comparison
CP082656.1 See Comparison
CP082507.1 See Comparison
CP082717.1 See Comparison
CP082604.1 See Comparison
NZ_CP047012.1 See Comparison
NZ_MW052848.1 See Comparison
CP119489.1 See Comparison
NZ_CP103546.1 See Comparison
NZ_MW052849.1 See Comparison
NZ_MW052847.1 See Comparison
NZ_CP146252.1 See Comparison
NZ_CP047012.1 See Comparison
NZ_CP016568.1 See Comparison
NZ_CP016572.1 See Comparison
NZ_CP016516.1 See Comparison
CP082563.1 See Comparison
CP082656.1 See Comparison
CP082507.1 See Comparison
CP082717.1 See Comparison
CP082604.1 See Comparison
CP119489.1 See Comparison
NZ_CP103546.1 See Comparison
NZ_MW052848.1 See Comparison
NZ_MW052848.1 See Comparison
NZ_MW052849.1 See Comparison
NZ_MW052847.1 See Comparison
CP082563.1 See Comparison
CP082656.1 See Comparison
CP082507.1 See Comparison
CP082717.1 See Comparison
CP082604.1 See Comparison
NZ_CP016568.1 See Comparison
NZ_CP016572.1 See Comparison
NZ_CP016516.1 See Comparison
NZ_CP103546.1 See Comparison
NZ_CP047012.1 See Comparison
NZ_CP146252.1 See Comparison
CP119489.1 See Comparison
NZ_MW052849.1 See Comparison
NZ_MW052847.1 See Comparison
NZ_CP016568.1 See Comparison
CP082563.1 See Comparison
CP082656.1 See Comparison
CP082507.1 See Comparison
CP082717.1 See Comparison
CP082604.1 See Comparison
NZ_CP047012.1 See Comparison
NZ_CP016572.1 See Comparison
NZ_CP016516.1 See Comparison


Plasmid Visualization

JSON GENBANK

SourceElement Name Display Sequence Favorite
amrfinderplusblaCMY-2copy
PGAGpilPcopy
PGAGtadAcopy
PGAGtype II secretion system F family proteincopy
PGAGpilus assembly protein PilXcopy
PGAGlytic transglycosylase domain-containing proteincopy
PGAGprepilin peptidasecopy
PGAGpilVcopy
PGAGhypothetical proteincopy
PGAGtyrosine-type recombinase/integrasecopy
SourceElement NameDisplaySequenceFavorite
Showing 1 to 10 of 123 entries
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Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process
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NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD
NUCCORE ACCAnalysis Software NameReference Database VersionGene SymbolGene NameDrug ClassAntimicrobial AgentGene StartGene StopGene LengthStrand OrientationSequence Identity (%)Coverage (%)
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NUCCORE ACCAnalysis Software NameReference Database VersionGene SymbolGene NameDrug ClassAntimicrobial AgentGene StartGene StopGene LengthStrand OrientationSequence Identity (%)Coverage (%)



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACCReplicon TypeRelaxase TypeMPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank
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NUCCORE ACCReplicon TypeRelaxase TypeMPF TypeOriT TypePredicted MobilityPrimary Cluster IDSecondary Cluster IDObserved Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank




BLAST results of detected typing markers by MOB-type
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
oriTJN253636MOBP4538245474plus1001004.37e-41172
relaxaseNC_019097MOBP4231945012minus94.4329901668
repliconMG764547IncI-gamma/K19111592146minus10010001906
mate-pair-formationNC_019097_00085MPF_I1193212747plus1001004.32e-178550
mate-pair-formationNZ_CM001473_00069MPF_I1862418968plus91.3791001.6699999999999998e-54189
mate-pair-formationNC_022267_00069MPF_I1896819615plus99.074915.71e-143448
mate-pair-formationNC_019097_00075MPF_I1967120651plus99.6941000657
mate-pair-formationNC_015965_00072MPF_I2194622647plus99.5731004.56e-153477
mate-pair-formationNC_023290_00086MPF_I2265023174plus99.4291003.4400000000000003e-100322
mate-pair-formationNC_019111_00038MPF_I2322823605plus100942.46e-47169
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
Showing 1 to 10 of 12 entries


Detected typing markers by plasmidfinder
NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2
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NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2