Plasmid CP082560.1

Sequence

Nucleotide Information

Accession CP082560.1
Description Salmonella enterica subsp. enterica serovar Typhimurium strain CVM N18S1595 plasmid pN18S1595-1, complete sequence
Source insd
Topology circular
Length 102421 bp
GC Content 0.50 %
Created at NCBI Aug. 30, 2021



Assembly

Genome Data Information

Accession GCA_007861865.2
Assembly Coverage 414


Biosample

Curated Collection Information
Accession 12360196

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query USA,TN
Original Query Type name
Coordinates (Lat/Lon) 35.77/-86.28
Address USA,TN

ECOSYSTEM
Original Query Chicken Wings
Classification food,meat
Host-associated Taxon

DISEASE
Original Query None
DOID/SYMP

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

NZ_CP146252.1 See Comparison
CP119489.1 See Comparison
CP119489.1 See Comparison
NZ_CP103546.1 See Comparison
NZ_MW052848.1 See Comparison
NZ_MW052849.1 See Comparison
NZ_MW052847.1 See Comparison
CP082560.1 See Comparison
CP082563.1 See Comparison
CP082656.1 See Comparison
CP082507.1 See Comparison
CP082717.1 See Comparison
CP082604.1 See Comparison
NZ_CP016568.1 See Comparison
NZ_CP016572.1 See Comparison
NZ_CP016516.1 See Comparison
NZ_CP146252.1 See Comparison
NZ_CP047012.1 See Comparison
CP082563.1 See Comparison
CP082656.1 See Comparison
CP082507.1 See Comparison
CP082717.1 See Comparison
CP082604.1 See Comparison
NZ_CP103546.1 See Comparison
NZ_MW052848.1 See Comparison
NZ_MW052849.1 See Comparison
NZ_MW052847.1 See Comparison
NZ_CP016572.1 See Comparison
NZ_CP047012.1 See Comparison
NZ_CP016516.1 See Comparison
NZ_MW052848.1 See Comparison
NZ_CP016568.1 See Comparison
NZ_CP103546.1 See Comparison
NZ_CP146252.1 See Comparison
CP119489.1 See Comparison
NZ_MW052849.1 See Comparison
NZ_MW052847.1 See Comparison
CP082656.1 See Comparison
CP082507.1 See Comparison
CP082717.1 See Comparison
CP082604.1 See Comparison
NZ_CP016568.1 See Comparison
CP082563.1 See Comparison
NZ_CP016516.1 See Comparison
NZ_CP047012.1 See Comparison
NZ_CP016572.1 See Comparison
CP119489.1 See Comparison
NZ_CP146252.1 See Comparison
NZ_CP103546.1 See Comparison
NZ_CP047012.1 See Comparison
NZ_MW052848.1 See Comparison
NZ_MW052849.1 See Comparison
NZ_MW052847.1 See Comparison
CP082563.1 See Comparison
CP082656.1 See Comparison
CP082507.1 See Comparison
CP082717.1 See Comparison
CP082604.1 See Comparison
NZ_CP016568.1 See Comparison
NZ_CP016572.1 See Comparison
NZ_CP016516.1 See Comparison
NZ_CP146252.1 See Comparison
NZ_CP103546.1 See Comparison
CP119489.1 See Comparison
NZ_MW052848.1 See Comparison
NZ_MW052849.1 See Comparison
NZ_MW052847.1 See Comparison
NZ_CP047012.1 See Comparison
CP082563.1 See Comparison
CP082656.1 See Comparison
CP082507.1 See Comparison
CP082717.1 See Comparison
CP082604.1 See Comparison
NZ_CP016568.1 See Comparison
NZ_CP016572.1 See Comparison
NZ_CP016516.1 See Comparison
NZ_CP146252.1 See Comparison
CP119489.1 See Comparison
NZ_MW052848.1 See Comparison
NZ_CP103546.1 See Comparison
NZ_MW052849.1 See Comparison
NZ_MW052847.1 See Comparison
CP082563.1 See Comparison
CP082507.1 See Comparison
CP082717.1 See Comparison
CP082604.1 See Comparison
CP082656.1 See Comparison
NZ_CP047012.1 See Comparison
NZ_CP016568.1 See Comparison
NZ_CP016572.1 See Comparison
NZ_CP016516.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore