Plasmid NZ_CP103519.1

Sequence

Nucleotide Information

Accession NZ_CP103519.1
Description Escherichia coli strain 5444 plasmid pMB9292_4, complete sequence
Source refseq
Topology circular
Length 3133 bp
GC Content 0.45 %
Created at NCBI Sept. 6, 2022



Assembly

Genome Data Information

Accession GCF_024917955.1
Assembly Coverage 209


Biosample

Curated Collection Information
Accession 28174095

PLASMID INFORMATION
Genotype ST44

GEOGRAPHICAL INFORMATION
Original Query 29.7068N;95.3971W
Original Query Type coordinates
Coordinates (Lat/Lon) 29.71/-95.40
Address University of Texas MD Anderson Cancer Center, 1515, Holcombe Boulevard, Texas Medical Center, Houston, Harris County, Texas, 77030, United States

ECOSYSTEM
Original Query Homo sapiens,blood
Classification blood,circulatory_system,host_associated
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query Bacteremia
DOID/SYMP
  • Bacterial infectious disease (DOID:104 )
    • A disease by infectious agent that results_in infection, has_material_basis_in Bacteria.
    • Has_material_basis_in: ['bacteria']

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

NZ_CP041117.1 See Comparison
NZ_CP115374.1 See Comparison
NZ_CP116999.1 See Comparison
NZ_CP142051.1 See Comparison
CP056790.1 See Comparison
NZ_CP116992.1 See Comparison
CP082472.1 See Comparison
NZ_CP091670.1 See Comparison
NZ_CP103708.1 See Comparison
NZ_CP103602.1 See Comparison
NZ_CP047017.1 See Comparison
NZ_CP041117.1 See Comparison
NZ_CP142051.1 See Comparison
NZ_CP115374.1 See Comparison
NZ_CP116999.1 See Comparison
NZ_CP091670.1 See Comparison
CP056790.1 See Comparison
NZ_CP116992.1 See Comparison
NZ_CP103708.1 See Comparison
NZ_CP103602.1 See Comparison
NZ_CP116999.1 See Comparison
CP082472.1 See Comparison
NZ_CP047017.1 See Comparison
NZ_CP041117.1 See Comparison
NZ_CP115374.1 See Comparison
NZ_CP116992.1 See Comparison
NZ_CP142051.1 See Comparison
CP056790.1 See Comparison
CP082472.1 See Comparison
NZ_CP103708.1 See Comparison
NZ_CP103602.1 See Comparison
NZ_CP091670.1 See Comparison
NZ_CP115374.1 See Comparison
NZ_CP047017.1 See Comparison
NZ_CP041117.1 See Comparison
NZ_CP142051.1 See Comparison
NZ_CP116999.1 See Comparison
NZ_CP047017.1 See Comparison
NZ_CP116992.1 See Comparison
NZ_CP103708.1 See Comparison
NZ_CP103602.1 See Comparison
NZ_CP091670.1 See Comparison
CP082472.1 See Comparison
CP056790.1 See Comparison
NZ_CP103519.1 See Comparison
NZ_CP142051.1 See Comparison
NZ_CP115374.1 See Comparison
NZ_CP041117.1 See Comparison
NZ_CP116999.1 See Comparison
NZ_CP116992.1 See Comparison
CP056790.1 See Comparison
CP082472.1 See Comparison
NZ_CP103708.1 See Comparison
NZ_CP091670.1 See Comparison
NZ_CP103602.1 See Comparison
NZ_CP115374.1 See Comparison
NZ_CP047017.1 See Comparison
NZ_CP041117.1 See Comparison
NZ_CP091670.1 See Comparison
NZ_CP142051.1 See Comparison
NZ_CP116992.1 See Comparison
NZ_CP103602.1 See Comparison
NZ_CP116999.1 See Comparison
CP056790.1 See Comparison
NZ_CP103708.1 See Comparison
CP082472.1 See Comparison
NZ_CP047017.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore