Plasmid NZ_CP041117.1
Sequence
Nucleotide Information
| Accession | NZ_CP041117.1 |
|---|---|
| Description | Escherichia coli strain ECCTRSRTH03 plasmid unnamed7, complete sequence |
| Source | refseq |
| Topology | circular |
| Length | 3133 bp |
| GC Content | 0.45 % |
| Created at NCBI | June 19, 2019 |
Host Taxonomy
According to NCBI Taxonomy
| Assigned Host | Escherichia coli (562) |
|---|
Lineage
| Superkingdom | Bacteria (2) |
|---|---|
| Phylum | Pseudomonadota (1224) |
| Class | Gammaproteobacteria (1236) |
| Order | Enterobacterales (91347) |
| Family | Enterobacteriaceae (543) |
| Genus | Escherichia (561) |
| Species | Escherichia_coli (562) |
| Strain |
Biosample
Curated Collection Information
| Accession | 7450616 |
|---|
PLASMID INFORMATION
GEOGRAPHICAL INFORMATION
| Original Query | 13.8199N;100.0622E |
|---|---|
| Original Query Type | coordinates |
| Coordinates (Lat/Lon) | 13.82/100.06 |
| Address | Thesa Road, Nakhon Pathom, ลำพยา, Nakhon Pathom Province, 73000, Thailand |
ECOSYSTEM
| Original Query | Swine,Rectal swab |
|---|---|
| Classification | gastrointestinal_system,host_associated,rectal |
| Host-associated Taxon |
|
DISEASE
| Original Query | None |
|---|---|
| DOID/SYMP |
Visualization
Plasmids from same Biosample
Similar Plasmids
based on Mash distance
Plasmid Visualization
Grays
Blues
Purples
Reds
Oranges
Greens
100
Hex
R
G
B
| Source | Element Name | Display | Sequence | Favorite |
|---|---|---|---|---|
| PGAG | hypothetical protein | copy | ||
| PGAG | mobA | copy | ||
| PGAG | Rop family plasmid primer RNA-binding protein | copy | ||
| PGAG | replication initiation protein | copy | ||
| PGAG | hypothetical protein | copy | ||
| MOB-typer | MOB_unknown | copy | ||
| MOB-typer | rep_cluster_2358 | copy | ||
| MOB-typer | MOBF | copy | ||
| Source | Element Name | Display | Sequence | Favorite |
Showing 1 to 8 of 8 entries
Annotations
based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
| NUCCORE ACC | Gene | Locus Tag | Product | Protein id | Codon Start | Translation Table | GO process |
|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Gene | Locus Tag | Product | Protein id | Codon Start | Translation Table | GO process |
Typing
based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
| NUCCORE ACC | Replicon Type | Relaxase Type | MPF Type | OriT Type | Predicted Mobility | Primary Cluster ID | Secondary Cluster ID | Observed Host Range Ncbi Name | Mash Neighbor Distance | Reported Host Range Lit Rank |
|---|---|---|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Replicon Type | Relaxase Type | MPF Type | OriT Type | Predicted Mobility | Primary Cluster ID | Secondary Cluster ID | Observed Host Range Ncbi Name | Mash Neighbor Distance | Reported Host Range Lit Rank |
BLAST results of detected typing markers by MOB-type
| biomarker | MOB-suite ID | Element | Start | End | Strand | Identity | Coverage | Evalue | Bitscore |
|---|---|---|---|---|---|---|---|---|---|
| oriT | NZ_CP014319 | MOB_unknown | 1560 | 1798 | minus | 98.75 | 99 | 1e-116 | 425 |
| replicon | CP000974_00005 | rep_cluster_2358 | 2328 | 2778 | plus | 88.494 | 90 | 1.02e-154 | 553 |
| relaxase | CP019897 | MOBF | 1231 | 1551 | minus | 99.065 | 100 | 2.32e-62 | 210 |
| biomarker | MOB-suite ID | Element | Start | End | Strand | Identity | Coverage | Evalue | Bitscore |
Showing 1 to 3 of 3 entries
Detected typing markers by plasmidfinder
| NUCCORE ACC | Typing | Identity | Coverage | Start | End | Strand | Organism L1 | Organism L2 |
|---|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Typing | Identity | Coverage | Start | End | Strand | Organism L1 | Organism L2 |