Plasmid CP082472.1

Sequence

Nucleotide Information

Accession CP082472.1
Description Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS1607455 plasmid pF18S013-4, complete sequence
Source insd
Topology circular
Length 3133 bp
GC Content 0.45 %
Created at NCBI Sept. 2, 2021



Assembly

Genome Data Information

Accession GCA_008479505.2
Assembly Coverage 379


Biosample

Curated Collection Information

Accession 5661217

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query USA,VA
Original Query Type name
Coordinates (Lat/Lon) 37.12/-78.49
Address USA,VA

ECOSYSTEM
Original Query Animal-Turkey-Young Turkey
Classification host_associated
Host-associated Taxon
  • Meleagris gallopavo (9103)

DISEASE
Original Query None
DOID/SYMP

Visualization


Plasmids from same Biosample



Similar Plasmids

based on Mash distance

NZ_CP041117.1 See Comparison
NZ_CP115374.1 See Comparison
NZ_CP116999.1 See Comparison
NZ_CP142051.1 See Comparison
CP056790.1 See Comparison
NZ_CP116992.1 See Comparison
NZ_CP103708.1 See Comparison
NZ_CP103602.1 See Comparison
NZ_CP103519.1 See Comparison
NZ_CP116999.1 See Comparison
NZ_CP091670.1 See Comparison
NZ_CP115374.1 See Comparison
NZ_CP047017.1 See Comparison
NZ_CP041117.1 See Comparison
NZ_CP091670.1 See Comparison
CP056790.1 See Comparison
NZ_CP116992.1 See Comparison
NZ_CP103519.1 See Comparison
NZ_CP142051.1 See Comparison
NZ_CP103708.1 See Comparison
NZ_CP103602.1 See Comparison
NZ_CP047017.1 See Comparison
CP082472.1 See Comparison
NZ_CP116999.1 See Comparison
NZ_CP041117.1 See Comparison
NZ_CP115374.1 See Comparison
CP056790.1 See Comparison
NZ_CP142051.1 See Comparison
NZ_CP116992.1 See Comparison
NZ_CP103519.1 See Comparison
NZ_CP103602.1 See Comparison
NZ_CP103708.1 See Comparison
NZ_CP041117.1 See Comparison
NZ_CP091670.1 See Comparison
NZ_CP047017.1 See Comparison
CP056790.1 See Comparison
NZ_CP116999.1 See Comparison
NZ_CP142051.1 See Comparison
NZ_CP115374.1 See Comparison
NZ_CP116992.1 See Comparison
NZ_CP103602.1 See Comparison
NZ_CP091670.1 See Comparison
NZ_CP041117.1 See Comparison
NZ_CP115374.1 See Comparison
CP056790.1 See Comparison
NZ_CP116992.1 See Comparison
NZ_CP091670.1 See Comparison
NZ_CP047017.1 See Comparison
NZ_CP041117.1 See Comparison
NZ_CP115374.1 See Comparison
NZ_CP116999.1 See Comparison
NZ_CP116992.1 See Comparison
NZ_CP103519.1 See Comparison
NZ_CP103708.1 See Comparison
NZ_CP047017.1 See Comparison
NZ_CP116999.1 See Comparison
NZ_CP142051.1 See Comparison
NZ_CP103519.1 See Comparison
NZ_CP103708.1 See Comparison
NZ_CP103602.1 See Comparison
NZ_CP142051.1 See Comparison
CP056790.1 See Comparison
NZ_CP103519.1 See Comparison
NZ_CP103708.1 See Comparison
NZ_CP103602.1 See Comparison
NZ_CP091670.1 See Comparison
NZ_CP047017.1 See Comparison


Plasmid Visualization


NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)

NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Typing


based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore