Plasmid NZ_CP102550.1

Sequence

Nucleotide Information

Accession NZ_CP102550.1
Description Klebsiella pneumoniae strain KPH1 plasmid p4, complete sequence
Source refseq
Topology circular
Length 5251 bp
GC Content 0.49 %
Created at NCBI Aug. 17, 2022



Assembly

Genome Data Information

Accession GCF_024666265.1
Assembly Coverage 1


Biosample

Curated Collection Information
Accession 30176384

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query 15.8700N;100.9925E
Original Query Type coordinates
Coordinates (Lat/Lon) 15.87/100.99
Address New Life Cafe, 193, พช.2027, Ban Khlong Takro, Ban Nong Chaeng, Ban Phot, Phetchabun Province, 42180, Thailand

ECOSYSTEM
Original Query Homo sapiens,microbial
Classification host_associated,material,organic
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query Klebsiella pneumoniae infection
DOID/SYMP
  • Klebsiella pneumonia (DOID:13272 )
    • A bacterial pneumonia involving Klebsiella pneumoniae infection. Patients with Klebsiella pneumonia tend to cough up a characteristic sputum that is said to resemble red-currant jelly. Klebsiella pneumonia tends to affect people with underlying diseases, such as alcoholism, diabetes and chronic lung disease. The symptoms include high fever, rigors and pleuritic pain, and hemoptysis.

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

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NZ_CP079662.1 See Comparison
NZ_CP079696.1 See Comparison
NZ_CP079650.1 See Comparison
NZ_CP079622.1 See Comparison
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NZ_CP079119.1 See Comparison
NC_016979.1 See Comparison
NZ_CP045021.1 See Comparison
NZ_CP029589.1 See Comparison
NZ_CP029592.1 See Comparison
NZ_CP024043.1 See Comparison
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NZ_CP103617.1 See Comparison
NZ_LR890626.1 See Comparison
CP128714.1 See Comparison
NZ_CP069585.1 See Comparison
NZ_CP069492.1 See Comparison
NZ_CP069457.1 See Comparison
NZ_CP069555.1 See Comparison
NZ_OP378660.1 See Comparison
NZ_CP104801.1 See Comparison
NZ_CP110639.1 See Comparison
NZ_CP101882.1 See Comparison
NZ_CP054976.1 See Comparison
NZ_CP083065.1 See Comparison
NZ_CP079650.1 See Comparison
NZ_CP079622.1 See Comparison
NZ_CP079177.1 See Comparison
NZ_CP079662.1 See Comparison
NZ_CP079696.1 See Comparison
NZ_CP079119.1 See Comparison
NC_016979.1 See Comparison
NZ_CP045021.1 See Comparison
NZ_CP029589.1 See Comparison
NZ_CP029592.1 See Comparison
NZ_LR890626.1 See Comparison
NZ_CP024043.1 See Comparison
NZ_CP135702.1 See Comparison
CP128714.1 See Comparison
NZ_CP069585.1 See Comparison
NZ_CP069492.1 See Comparison
NZ_CP069457.1 See Comparison
NZ_CP069555.1 See Comparison
NZ_CP103617.1 See Comparison
NZ_OP378660.1 See Comparison
NZ_CP104801.1 See Comparison
NZ_CP110639.1 See Comparison
NZ_CP101882.1 See Comparison
NZ_CP054976.1 See Comparison
NC_016979.1 See Comparison
NZ_CP079662.1 See Comparison
NZ_CP079696.1 See Comparison
NZ_CP083065.1 See Comparison
NZ_CP079650.1 See Comparison
NZ_CP079622.1 See Comparison
NZ_CP079177.1 See Comparison
NZ_CP079119.1 See Comparison
NZ_CP024043.1 See Comparison
NZ_CP045021.1 See Comparison
NZ_CP029589.1 See Comparison
NZ_CP029592.1 See Comparison
NZ_CP135702.1 See Comparison
CP128714.1 See Comparison
NZ_CP069585.1 See Comparison
NZ_CP069492.1 See Comparison
NZ_CP069457.1 See Comparison
NZ_CP069555.1 See Comparison
NZ_CP045021.1 See Comparison
NZ_LR890626.1 See Comparison
NZ_OP378660.1 See Comparison
NZ_CP104801.1 See Comparison
NZ_CP110639.1 See Comparison
NZ_CP103617.1 See Comparison
NZ_CP079650.1 See Comparison
NZ_CP079622.1 See Comparison
NZ_CP079177.1 See Comparison
NZ_CP079119.1 See Comparison
NC_016979.1 See Comparison
NZ_CP101882.1 See Comparison
NZ_CP054976.1 See Comparison
NZ_CP083065.1 See Comparison
NZ_CP079662.1 See Comparison
NZ_CP079696.1 See Comparison
NZ_CP135702.1 See Comparison
NZ_CP024043.1 See Comparison
NZ_CP029589.1 See Comparison
NZ_CP029592.1 See Comparison
NZ_LR890626.1 See Comparison
CP128714.1 See Comparison
NZ_CP069585.1 See Comparison
NZ_CP069492.1 See Comparison
NZ_CP069457.1 See Comparison
NZ_CP069555.1 See Comparison
NZ_CP104801.1 See Comparison
NZ_OP378660.1 See Comparison
NZ_CP083065.1 See Comparison
NZ_CP110639.1 See Comparison
NZ_CP102550.1 See Comparison
NZ_CP103617.1 See Comparison
NZ_CP101882.1 See Comparison
NZ_CP054976.1 See Comparison
NZ_CP079662.1 See Comparison
NZ_CP079650.1 See Comparison
NZ_CP079622.1 See Comparison
NZ_CP079696.1 See Comparison
NC_016979.1 See Comparison
NZ_CP079177.1 See Comparison
NZ_CP079119.1 See Comparison
NZ_CP024043.1 See Comparison
NZ_CP045021.1 See Comparison
NZ_CP029589.1 See Comparison
NZ_CP029592.1 See Comparison
NZ_CP135702.1 See Comparison
NZ_LR890626.1 See Comparison
NZ_CP069585.1 See Comparison
NZ_CP069492.1 See Comparison
NZ_CP069457.1 See Comparison
NZ_CP069555.1 See Comparison
CP128714.1 See Comparison
NZ_CP104801.1 See Comparison
NZ_OP378660.1 See Comparison
NZ_CP110639.1 See Comparison
NZ_CP054976.1 See Comparison
NZ_CP103617.1 See Comparison
NZ_CP101882.1 See Comparison
NZ_CP079662.1 See Comparison
NZ_CP083065.1 See Comparison
NZ_CP079119.1 See Comparison
NZ_CP079696.1 See Comparison
NZ_CP079650.1 See Comparison
NZ_CP079622.1 See Comparison
NZ_CP079177.1 See Comparison
NC_016979.1 See Comparison
NZ_CP029589.1 See Comparison
NZ_CP045021.1 See Comparison
NZ_CP029592.1 See Comparison
NZ_CP024043.1 See Comparison
NZ_CP135702.1 See Comparison
NZ_OP378660.1 See Comparison
NZ_CP069492.1 See Comparison
NZ_CP069457.1 See Comparison
NZ_CP069555.1 See Comparison
NZ_LR890626.1 See Comparison
CP128714.1 See Comparison
NZ_CP069585.1 See Comparison
NZ_CP110639.1 See Comparison
NZ_CP104801.1 See Comparison
NZ_CP103617.1 See Comparison
NZ_CP101882.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore