Plasmid NZ_CP102063.1

Sequence

Nucleotide Information

Accession	NZ_CP102063.1
Description	Escherichia coli strain C31 plasmid pNDM1, complete sequence
Source	refseq
Topology	circular
Length	41190 bp
GC Content	0.51 %
Created at NCBI	Aug. 7, 2022

Host Taxonomy

According to NCBI Taxonomy

Assigned Host	Escherichia coli (562)

Lineage

Superkingdom	Bacteria (2)
Phylum	Pseudomonadota (1224)
Class	Gammaproteobacteria (1236)
Order	Enterobacterales (91347)
Family	Enterobacteriaceae (543)
Genus	Escherichia (561)
Species	Escherichia_coli (562)
Strain

Assembly

Genome Data Information

Accession	GCF_024579775.1
Assembly Coverage	180

Biosample

Curated Collection Information

Accession	30011701

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION

Original Query	1.2904N;103.7764E
Original Query Type	coordinates
Coordinates (Lat/Lon)	1.29/103.78
Address	348L, Heng Mui Keng Terrace, Queenstown, Southwest, Singapore, 119614, Singapore

ECOSYSTEM

Original Query	Homo sapiens,urine
Classification	host_associated,urinary_system
Host-associated Taxon	Homo sapiens (9606)

DISEASE

Original Query	Urine infection
DOID/SYMP	Disease infectious agent (DOID:0050117 ) A disease that is the consequence of the presence of pathogenic microbial agents, including pathogenic viruses, pathogenic bacteria, fungi, protozoa, multicellular parasites, and aberrant proteins known as prions.

Visualization

Plasmids from same Biosample

Similar Plasmids

based on Mash distance

NZ_MZ004973.1	See Comparison
LC521837.1	See Comparison
NC_024954.1	See Comparison
NC_019163.1	See Comparison
CP040826.1	See Comparison
NZ_CP034403.1	See Comparison
CP034398.1	See Comparison
CP067706.1	See Comparison
NZ_KP900017.1	See Comparison
LC613145.1	See Comparison
NZ_CP102555.1	See Comparison
NZ_JQ349086.1	See Comparison
NZ_CP047969.1	See Comparison
NZ_MK368725.1	See Comparison
NZ_MZ004973.1	See Comparison
NC_019163.1	See Comparison
NC_024954.1	See Comparison
LC521837.1	See Comparison
NZ_KP900017.1	See Comparison
CP040826.1	See Comparison
NZ_CP034403.1	See Comparison
CP034398.1	See Comparison
NZ_JQ349086.1	See Comparison
LC613145.1	See Comparison
LC521837.1	See Comparison
NZ_CP047969.1	See Comparison
NZ_MK368725.1	See Comparison
NZ_CP102555.1	See Comparison
CP067706.1	See Comparison
NZ_MZ004973.1	See Comparison
NC_024954.1	See Comparison
NZ_JQ349086.1	See Comparison
NC_019163.1	See Comparison
CP040826.1	See Comparison
NZ_CP034403.1	See Comparison
CP034398.1	See Comparison
NZ_CP102063.1	See Comparison
LC613145.1	See Comparison
NZ_CP102555.1	See Comparison
NZ_KP900017.1	See Comparison
NZ_CP047969.1	See Comparison
NZ_MK368725.1	See Comparison
CP067706.1	See Comparison
NC_019163.1	See Comparison
NC_024954.1	See Comparison
NZ_MZ004973.1	See Comparison
LC521837.1	See Comparison
NZ_KP900017.1	See Comparison
NZ_CP034403.1	See Comparison
CP034398.1	See Comparison
CP040826.1	See Comparison
NZ_JQ349086.1	See Comparison
NZ_CP047969.1	See Comparison
LC613145.1	See Comparison
NZ_MZ004973.1	See Comparison
NZ_MK368725.1	See Comparison
CP067706.1	See Comparison
NZ_CP102555.1	See Comparison
LC521837.1	See Comparison
NZ_CP102555.1	See Comparison
NC_019163.1	See Comparison
CP040826.1	See Comparison
NZ_CP034403.1	See Comparison
CP034398.1	See Comparison
NZ_CP047969.1	See Comparison
NC_024954.1	See Comparison
NZ_JQ349086.1	See Comparison
NZ_KP900017.1	See Comparison
LC613145.1	See Comparison
NZ_MK368725.1	See Comparison
NC_019163.1	See Comparison
CP067706.1	See Comparison
NZ_MZ004973.1	See Comparison
LC521837.1	See Comparison
NC_024954.1	See Comparison
CP040826.1	See Comparison
NZ_CP034403.1	See Comparison
CP034398.1	See Comparison
NZ_KP900017.1	See Comparison
NZ_JQ349086.1	See Comparison
NZ_CP047969.1	See Comparison
LC613145.1	See Comparison
CP067706.1	See Comparison
NZ_MK368725.1	See Comparison
NZ_CP102555.1	See Comparison
NC_019163.1	See Comparison
LC521837.1	See Comparison
NC_024954.1	See Comparison
NZ_MZ004973.1	See Comparison
CP040826.1	See Comparison
NZ_CP034403.1	See Comparison
CP034398.1	See Comparison
NZ_CP047969.1	See Comparison
NZ_KP900017.1	See Comparison
NZ_JQ349086.1	See Comparison
LC613145.1	See Comparison
NZ_MK368725.1	See Comparison
NZ_CP102555.1	See Comparison
CP067706.1	See Comparison

Identical Plasmids

100% Sequence Identity

NZ_KP900017.1

Sequence

Accession: NZ_KP900017.1
Description: Raoultella ornithinolytica strain YNKP001 plasmid pYNKP001-NDM, complete sequence
Source: refseq
Created at NCBI: June 3, 2020

Host Taxonomy

Assigned Host: Raoultella ornithinolytica (54291)

Superkingdom : Bacteria (2)
Phylum : Pseudomonadota (1224)
Class : Gammaproteobacteria (1236)
Order : Enterobacterales (91347)
Family : Enterobacteriaceae (543)
Genus : Raoultella (160674)
Species : Raoultella_ornithinolytica (54291)
Strain:

Biosample

Accession: 14226604

GEOGRAPHICAL INFORMATION

Original Query: China
Original Query Type: name
Address: China
Coordinates (Lat/Lon): 34.41/86.03

ECOSYSTEM

Original Query: Homo sapiens
Classification: host_associated
Host-associated Taxon:
- Homo sapiens (9606)

Visualization

NC_024954.1

Sequence

Accession: NC_024954.1
Description: Escherichia coli plasmid pNDM-ECS01, complete sequence
Source: refseq
Created at NCBI: Sept. 25, 2014

Host Taxonomy

Assigned Host: Escherichia coli (562)

Superkingdom : Bacteria (2)
Phylum : Pseudomonadota (1224)
Class : Gammaproteobacteria (1236)
Order : Enterobacterales (91347)
Family : Enterobacteriaceae (543)
Genus : Escherichia (561)
Species : Escherichia_coli (562)
Strain:

Biosample

Accession: 14226796

GEOGRAPHICAL INFORMATION

Original Query: None
Original Query Type: None
Address: None
Coordinates (Lat/Lon):

ECOSYSTEM

Original Query: None
Classification: None
Host-associated Taxon:

Visualization

CP067706.1

Sequence

Accession: CP067706.1
Description: Klebsiella pneumoniae strain ARLG-4851 plasmid pC349_3, complete sequence
Source: insd
Created at NCBI: March 2, 2022

Host Taxonomy

Assigned Host: Klebsiella pneumoniae (573)

Superkingdom : Bacteria (2)
Phylum : Pseudomonadota (1224)
Class : Gammaproteobacteria (1236)
Order : Enterobacterales (91347)
Family : Enterobacteriaceae (543)
Genus : Klebsiella (570)
Species : Klebsiella_pneumoniae (573)
Strain:

Biosample

Accession: 15869026

GEOGRAPHICAL INFORMATION

Original Query: USA,South
Original Query Type: name
Address: USA,South
Coordinates (Lat/Lon): 33.31/-118.34

ECOSYSTEM

Original Query: Homo sapiens,respiratory
Classification: host_associated,respiratory_system
Host-associated Taxon:
- Homo sapiens (9606)

Visualization

Plasmid Visualization

NUCCORE ACC	Source	Element Name	Display	Sequence	Favorite
NUCCORE ACC	Source	Element Name	Display	Sequence	Favorite

Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)

NUCCORE ACC	Gene	Locus Tag	Product	Protein id	Codon Start	Translation Table	GO process
NUCCORE ACC	Gene	Locus Tag	Product	Protein id	Codon Start	Translation Table	GO process

Antimicrobial Resistance

based on NCBIAMRFinder and CARD

NUCCORE ACC	Analysis Software Name	Reference Database Version	Gene Symbol	Gene Name	Drug Class	Antimicrobial Agent	Gene Start	Gene Stop	Gene Length	Strand Orientation	Sequence Identity (%)	Coverage (%)
NUCCORE ACC	Analysis Software Name	Reference Database Version	Gene Symbol	Gene Name	Drug Class	Antimicrobial Agent	Gene Start	Gene Stop	Gene Length	Strand Orientation	Sequence Identity (%)	Coverage (%)

Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)

NUCCORE ACC	Contigs	md5 hash	Replicon Type	Relaxase Type	MPF Type	OriT Type	Predicted Mobility	Primary Cluster ID	Secondary Cluster ID	Observed Host Range Ncbi Rank	Observed Host Range Ncbi Name	Mash Nearest Neighbor	Mash Neighbor Distance	Mash Neighbor Identification	Reported Host Range Lit Rank	Reported Host Range Lit Name	Replicon Type Accession	Relaxase Type Accession	MPF Type Accession	OriT Type Accession	Associated PMID(s)
NUCCORE ACC	Contigs	md5 hash	Replicon Type	Relaxase Type	MPF Type	OriT Type	Predicted Mobility	Primary Cluster ID	Secondary Cluster ID	Observed Host Range Ncbi Rank	Observed Host Range Ncbi Name	Mash Nearest Neighbor	Mash Neighbor Distance	Mash Neighbor Identification	Reported Host Range Lit Rank	Reported Host Range Lit Name	Replicon Type Accession	Relaxase Type Accession	MPF Type Accession	OriT Type Accession	Associated PMID(s)

BLAST results of detected typing markers by MOB-type

NUCCORE ACC	biomarker	MOB-suite ID	Element	Start	End	Strand	Identity	Coverage	Evalue	Bitscore
NUCCORE ACC	biomarker	MOB-suite ID	Element	Start	End	Strand	Identity	Coverage	Evalue	Bitscore

Detected typing markers by plasmidfinder

NUCCORE ACC	Typing	Identity	Coverage	Start	End	Strand	HSP length	Template length	Position in ref	Positions in Contig	Note	Accession	Hit id	Organism L1	Organism L2
NUCCORE ACC	Typing	Identity	Coverage	Start	End	Strand	HSP length	Template length	Position in ref	Positions in Contig	Note	Accession	Hit id	Organism L1	Organism L2