Plasmid LC521837.1

Sequence

Nucleotide Information

Accession LC521837.1
Description Klebsiella pneumoniae C057 plasmid pC057_NDM1 DNA, complete sequence
Source insd
Topology circular
Length 41181 bp
GC Content 0.51 %
Created at NCBI April 8, 2021



Biosample

Curated Collection Information
Accession 18291971

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query Thailand,Udon Thani
Original Query Type name
Coordinates (Lat/Lon) 17.52/102.67
Address Thailand,Udon Thani

ECOSYSTEM
Original Query Homo sapiens
Classification host_associated
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query None
DOID/SYMP

Visualization

PNG JSON



Similar Plasmids

based on Mash distance

CP067706.1 See Comparison
NZ_MZ004973.1 See Comparison
NC_024954.1 See Comparison
NC_019163.1 See Comparison
CP040826.1 See Comparison
NZ_CP034403.1 See Comparison
CP034398.1 See Comparison
NZ_JQ349086.1 See Comparison
NZ_KP900017.1 See Comparison
NZ_CP047969.1 See Comparison
LC613145.1 See Comparison
NZ_CP102555.1 See Comparison
NZ_MK368725.1 See Comparison
NC_024954.1 See Comparison
NZ_CP102063.1 See Comparison
CP067706.1 See Comparison
NC_019163.1 See Comparison
NZ_MZ004973.1 See Comparison
CP040826.1 See Comparison
NZ_CP034403.1 See Comparison
CP034398.1 See Comparison
LC613145.1 See Comparison
NZ_KP900017.1 See Comparison
NZ_JQ349086.1 See Comparison
NZ_CP102063.1 See Comparison
NZ_MK368725.1 See Comparison
NZ_CP102555.1 See Comparison
NZ_CP047969.1 See Comparison
NC_019163.1 See Comparison
NZ_MZ004973.1 See Comparison
CP067706.1 See Comparison
NC_024954.1 See Comparison
NZ_MK368725.1 See Comparison
CP040826.1 See Comparison
NZ_CP034403.1 See Comparison
CP034398.1 See Comparison
NZ_JQ349086.1 See Comparison
NZ_KP900017.1 See Comparison
LC613145.1 See Comparison
NZ_CP047969.1 See Comparison
NZ_CP102555.1 See Comparison
NZ_CP034403.1 See Comparison
CP067706.1 See Comparison
NC_019163.1 See Comparison
CP040826.1 See Comparison
CP034398.1 See Comparison
NZ_CP102063.1 See Comparison
NZ_MZ004973.1 See Comparison
NC_024954.1 See Comparison
NZ_MK368725.1 See Comparison
NZ_JQ349086.1 See Comparison
NZ_KP900017.1 See Comparison
LC613145.1 See Comparison
NZ_CP047969.1 See Comparison
NZ_CP102063.1 See Comparison
NC_024954.1 See Comparison
NZ_CP102555.1 See Comparison
NZ_MZ004973.1 See Comparison
CP067706.1 See Comparison
NZ_CP034403.1 See Comparison
CP040826.1 See Comparison
NC_019163.1 See Comparison
CP034398.1 See Comparison
NZ_JQ349086.1 See Comparison
NZ_KP900017.1 See Comparison
NZ_CP047969.1 See Comparison
LC613145.1 See Comparison
NZ_MK368725.1 See Comparison
NZ_CP102555.1 See Comparison
NC_019163.1 See Comparison
CP067706.1 See Comparison
NC_024954.1 See Comparison
NZ_CP102063.1 See Comparison
NZ_MZ004973.1 See Comparison
LC521837.1 See Comparison
NZ_CP034403.1 See Comparison
CP040826.1 See Comparison
CP034398.1 See Comparison
NZ_KP900017.1 See Comparison
NZ_JQ349086.1 See Comparison
NZ_CP047969.1 See Comparison
LC613145.1 See Comparison
NZ_CP102063.1 See Comparison
NZ_MK368725.1 See Comparison
NZ_CP102555.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore