Plasmid NZ_CP034403.1

Sequence

Nucleotide Information

Accession NZ_CP034403.1
Description Escherichia coli strain CRE10 plasmid pCRE10.4, complete sequence
Source refseq
Topology circular
Length 41191 bp
GC Content 0.51 %
Created at NCBI Feb. 7, 2019



Assembly

Genome Data Information

Accession GCF_004135815.1
Assembly Coverage 158


Biosample

Curated Collection Information
Accession 10531954

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query 18.79038N;98.98468E
Original Query Type coordinates
Coordinates (Lat/Lon) 18.79/98.98
Address Chiang Mai District Office, Khang Ruan Jum Road, Muang Chiang Mai, Chiang Mai, Pa Daet, Saraphi District, Chiang Mai Province, 55520, Thailand

ECOSYSTEM
Original Query Homosapiens,stool
Classification fecal,gastrointestinal_system,host_associated
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query Gastroenteritis
DOID/SYMP
  • Gastroenteritis (DOID:2326 )
    • A gastrointestinal system infectious disease that involves inflammation of the lining of the stomach and small and large intestines, which is caused by viruses, bacteria, or parasites. Chemicals and drugs also cause gastroenteritis. The symptoms include diarrhea, loss of appetite, nausea, vomiting, cramps, and discomfort in the abdomen.

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

NZ_JQ349086.1 See Comparison
NZ_KP900017.1 See Comparison
LC613145.1 See Comparison
NZ_CP047969.1 See Comparison
NZ_MK368725.1 See Comparison
LC521837.1 See Comparison
NZ_CP102063.1 See Comparison
NZ_CP102555.1 See Comparison
CP067706.1 See Comparison
NZ_MZ004973.1 See Comparison
NC_024954.1 See Comparison
LC613145.1 See Comparison
CP040826.1 See Comparison
CP034398.1 See Comparison
NZ_JQ349086.1 See Comparison
NC_019163.1 See Comparison
NZ_KP900017.1 See Comparison
NZ_MK368725.1 See Comparison
NZ_CP047969.1 See Comparison
NZ_CP102063.1 See Comparison
NZ_CP102555.1 See Comparison
NC_024954.1 See Comparison
NZ_MZ004973.1 See Comparison
LC521837.1 See Comparison
CP067706.1 See Comparison
CP040826.1 See Comparison
NC_019163.1 See Comparison
CP034398.1 See Comparison
NZ_JQ349086.1 See Comparison
LC613145.1 See Comparison
NZ_KP900017.1 See Comparison
NZ_MK368725.1 See Comparison
NZ_CP047969.1 See Comparison
NZ_CP102063.1 See Comparison
NZ_CP102555.1 See Comparison
NC_019163.1 See Comparison
NZ_MZ004973.1 See Comparison
CP067706.1 See Comparison
LC521837.1 See Comparison
NZ_JQ349086.1 See Comparison
NC_024954.1 See Comparison
CP040826.1 See Comparison
NZ_CP034403.1 See Comparison
CP034398.1 See Comparison
NZ_CP102555.1 See Comparison
LC613145.1 See Comparison
NZ_KP900017.1 See Comparison
NZ_CP047969.1 See Comparison
NZ_MK368725.1 See Comparison
LC521837.1 See Comparison
NZ_CP102063.1 See Comparison
NZ_MZ004973.1 See Comparison
CP067706.1 See Comparison
NC_024954.1 See Comparison
CP040826.1 See Comparison
NC_019163.1 See Comparison
CP034398.1 See Comparison
LC613145.1 See Comparison
NZ_JQ349086.1 See Comparison
NZ_KP900017.1 See Comparison
NZ_CP102063.1 See Comparison
NZ_CP047969.1 See Comparison
NZ_MK368725.1 See Comparison
NC_019163.1 See Comparison
NZ_CP102555.1 See Comparison
CP067706.1 See Comparison
NZ_MZ004973.1 See Comparison
LC521837.1 See Comparison
NC_024954.1 See Comparison
CP040826.1 See Comparison
CP034398.1 See Comparison
NZ_JQ349086.1 See Comparison
NZ_CP102063.1 See Comparison
NZ_KP900017.1 See Comparison
NZ_CP047969.1 See Comparison
NZ_CP102555.1 See Comparison
LC613145.1 See Comparison
NZ_MK368725.1 See Comparison
CP067706.1 See Comparison
LC521837.1 See Comparison
NZ_MZ004973.1 See Comparison
NC_019163.1 See Comparison
NC_024954.1 See Comparison
CP034398.1 See Comparison
CP040826.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore