Plasmid NZ_CP100082.1

Sequence

Nucleotide Information

Accession NZ_CP100082.1
Description Klebsiella pneumoniae strain RJKP36 plasmid pRJKP36-6, complete sequence
Source refseq
Topology circular
Length 4510 bp
GC Content 0.45 %
Created at NCBI Oct. 29, 2022



Assembly

Genome Data Information

Accession GCF_025884095.1
Assembly Coverage 200


Biosample

Curated Collection Information
Accession 29388314

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query 31.02N;121.04E
Original Query Type coordinates
Coordinates (Lat/Lon) 31.02/121.04
Address Laozhufeng Highway, Liantang, Qingpu District, Shanghai, China

ECOSYSTEM
Original Query Homo sapiens,throat swab
Classification host_associated
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query None
DOID/SYMP

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

NZ_CP097393.1 See Comparison
NZ_CP079732.1 See Comparison
NZ_CP091989.1 See Comparison
CP128764.1 See Comparison
NZ_CP018440.1 See Comparison
NZ_CP024196.1 See Comparison
NZ_CP024561.1 See Comparison
NZ_CP024540.1 See Comparison
NZ_CP024533.1 See Comparison
NZ_CP024526.1 See Comparison
NZ_CP024554.1 See Comparison
NZ_CP024568.1 See Comparison
CP128764.1 See Comparison
NZ_CP144709.1 See Comparison
NZ_CP045682.1 See Comparison
NZ_CP018440.1 See Comparison
NZ_CP024561.1 See Comparison
NZ_CP024540.1 See Comparison
NZ_CP024533.1 See Comparison
NZ_CP024526.1 See Comparison
NZ_CP024554.1 See Comparison
NZ_CP024568.1 See Comparison
NZ_CP024196.1 See Comparison
NZ_CP150009.1 See Comparison
NZ_CP097393.1 See Comparison
NZ_CP091989.1 See Comparison
NZ_CP079732.1 See Comparison
NZ_CP150009.1 See Comparison
CP128764.1 See Comparison
NZ_CP045682.1 See Comparison
NZ_CP079732.1 See Comparison
NZ_CP018440.1 See Comparison
NZ_CP144709.1 See Comparison
NZ_CP097393.1 See Comparison
NZ_CP091989.1 See Comparison
NZ_CP024561.1 See Comparison
NZ_CP024540.1 See Comparison
NZ_CP024533.1 See Comparison
NZ_CP024526.1 See Comparison
NZ_CP024554.1 See Comparison
NZ_CP024568.1 See Comparison
NZ_CP024196.1 See Comparison
NZ_CP045682.1 See Comparison
NZ_CP150009.1 See Comparison
NZ_CP144709.1 See Comparison
NZ_CP097393.1 See Comparison
NZ_CP100082.1 See Comparison
NZ_CP091989.1 See Comparison
NZ_CP024196.1 See Comparison
NZ_CP018440.1 See Comparison
NZ_CP079732.1 See Comparison
NZ_CP097393.1 See Comparison
NZ_CP024561.1 See Comparison
NZ_CP024540.1 See Comparison
NZ_CP024533.1 See Comparison
NZ_CP024526.1 See Comparison
NZ_CP024554.1 See Comparison
NZ_CP024568.1 See Comparison
NZ_CP150009.1 See Comparison
CP128764.1 See Comparison
NZ_CP144709.1 See Comparison
NZ_CP045682.1 See Comparison
NZ_CP091989.1 See Comparison
NZ_CP079732.1 See Comparison
NZ_CP018440.1 See Comparison
NZ_CP024561.1 See Comparison
NZ_CP024540.1 See Comparison
NZ_CP024533.1 See Comparison
NZ_CP024526.1 See Comparison
NZ_CP024554.1 See Comparison
NZ_CP024568.1 See Comparison
NZ_CP024196.1 See Comparison
CP128764.1 See Comparison
NZ_CP150009.1 See Comparison
NZ_CP045682.1 See Comparison
NZ_CP097393.1 See Comparison
NZ_CP091989.1 See Comparison
NZ_CP144709.1 See Comparison
NZ_CP079732.1 See Comparison
NZ_CP018440.1 See Comparison
NZ_CP024561.1 See Comparison
NZ_CP024540.1 See Comparison
NZ_CP024533.1 See Comparison
NZ_CP024526.1 See Comparison
NZ_CP024554.1 See Comparison
NZ_CP024568.1 See Comparison
NZ_CP024196.1 See Comparison
CP128764.1 See Comparison
NZ_CP144709.1 See Comparison
NZ_CP150009.1 See Comparison
NZ_CP045682.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore