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v. 2024_05_31_v2
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Typing
Plasmid NZ_CP091661.1
Sequence
Nucleotide Information
Accession
NZ_CP091661.1
Description
Escherichia coli strain KFu024 plasmid pKFu024_3, complete sequence
Source
refseq
Topology
circular
Length
1506 bp
GC Content
0.50 %
Created at NCBI
March 8, 2022
Host Taxonomy
According to NCBI Taxonomy
Assigned Host
Escherichia coli (562)
Lineage
Superkingdom
Bacteria (2)
Phylum
Pseudomonadota (1224)
Class
Gammaproteobacteria (1236)
Order
Enterobacterales (91347)
Family
Enterobacteriaceae (543)
Genus
Escherichia (561)
Species
Escherichia_coli (562)
Strain
Assembly
Genome Data Information
Accession
GCF_022494625.1
Assembly Coverage
100
Biosample
Curated Collection Information
Accession
25236401
PLASMID INFORMATION
GEOGRAPHICAL INFORMATION
Original Query
34.6N;135.7E
Original Query Type
coordinates
Coordinates (Lat/Lon)
34.60/135.70
Address
Kudo 4-chome, Oji, Kitakatsuragi County, Nara Prefecture, 636-8535, Japan
ECOSYSTEM
Original Query
river water
Classification
aquatic,freshwater,river
Host-associated Taxon
DISEASE
Original Query
None
DOID/SYMP
Visualization
PNG
JSON
Collapse all
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Plasmids from same Biosample
NZ_CP091660.1
NZ_CP091658.1
Similar Plasmids
based on Mash distance
NZ_CP103486.1
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NZ_OW849069.1
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NZ_CP060913.1
See Comparison
NZ_CP060907.1
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NZ_CP060891.1
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NZ_CP055008.1
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NZ_CP055036.1
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NZ_CP054194.1
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NZ_CP085073.1
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NZ_CP080154.1
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NZ_OU342905.1
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NZ_CP076317.1
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NZ_CP069700.1
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NZ_CP069656.1
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NZ_CP069676.1
See Comparison
NZ_CP010877.1
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NZ_CP023506.1
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NZ_CP035483.1
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NZ_CP035726.1
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NZ_CP035475.1
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NZ_CP035522.1
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NZ_CP134357.1
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NZ_OY754414.1
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NZ_OY754420.1
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NZ_OY757111.1
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NZ_OZ040273.1
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CP134917.1
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NZ_CP133460.1
See Comparison
NZ_AP027930.1
See Comparison
NZ_OZ040722.1
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NZ_CP148506.1
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NZ_CP147108.1
See Comparison
NZ_CP147104.1
See Comparison
NZ_CP148492.1
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NZ_CP070905.1
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NZ_AP027753.1
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NZ_CP054223.1
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NZ_AP027665.1
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NZ_OY839925.1
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NZ_CP047582.1
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CP098968.1
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NZ_CP070182.1
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NZ_LR890656.1
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NZ_CP059720.1
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NZ_CP069837.1
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CP099050.1
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NZ_CP103486.1
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NZ_CP060913.1
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NZ_OW849069.1
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NZ_CP060907.1
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NZ_CP055008.1
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NZ_CP060891.1
See Comparison
NZ_CP055036.1
See Comparison
NZ_CP054194.1
See Comparison
NZ_OU342905.1
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NZ_CP085073.1
See Comparison
NZ_CP080154.1
See Comparison
NZ_OY754414.1
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NZ_CP076317.1
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NZ_CP010877.1
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NZ_CP069700.1
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NZ_CP069656.1
See Comparison
NZ_CP069676.1
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NZ_CP035726.1
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NZ_CP035475.1
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NZ_CP035522.1
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NZ_CP035483.1
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NZ_CP023506.1
See Comparison
NZ_OY757111.1
See Comparison
NZ_OY754420.1
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NZ_CP133460.1
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CP134917.1
See Comparison
NZ_CP134357.1
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NZ_CP147108.1
See Comparison
NZ_AP027930.1
See Comparison
NZ_OZ040273.1
See Comparison
NZ_OZ040722.1
See Comparison
NZ_CP147104.1
See Comparison
NZ_OY839925.1
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NZ_CP148506.1
See Comparison
NZ_CP148492.1
See Comparison
NZ_AP027665.1
See Comparison
NZ_AP027753.1
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NZ_CP054223.1
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CP098968.1
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NZ_CP047582.1
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NZ_CP070905.1
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NZ_LR890656.1
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NZ_CP059720.1
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NZ_CP069837.1
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NZ_CP070182.1
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CP099050.1
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NZ_CP055008.1
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NZ_CP060891.1
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NZ_CP103486.1
See Comparison
NZ_OW849069.1
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NZ_CP060913.1
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NZ_CP060907.1
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NZ_CP055036.1
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NZ_CP054194.1
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NZ_CP085073.1
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NZ_CP080154.1
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NZ_CP076317.1
See Comparison
NZ_OU342905.1
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NZ_CP035726.1
See Comparison
NZ_CP069700.1
See Comparison
NZ_CP069656.1
See Comparison
NZ_CP069676.1
See Comparison
NZ_CP010877.1
See Comparison
NZ_CP035475.1
See Comparison
NZ_CP035522.1
See Comparison
NZ_CP035483.1
See Comparison
CP134917.1
See Comparison
NZ_OY757111.1
See Comparison
NZ_CP023506.1
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NZ_OY754414.1
See Comparison
NZ_OY754420.1
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NZ_CP134357.1
See Comparison
NZ_CP147108.1
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NZ_CP133460.1
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NZ_OZ040273.1
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NZ_OZ040722.1
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NZ_AP027930.1
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NZ_CP147104.1
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NZ_AP027665.1
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NZ_CP148506.1
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NZ_CP148492.1
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NZ_AP027753.1
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NZ_CP069837.1
See Comparison
NZ_CP070905.1
See Comparison
NZ_OY839925.1
See Comparison
NZ_CP054223.1
See Comparison
NZ_CP047582.1
See Comparison
NZ_CP070182.1
See Comparison
NZ_LR890656.1
See Comparison
CP098968.1
See Comparison
NZ_CP059720.1
See Comparison
CP099050.1
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NZ_CP060913.1
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NZ_CP103486.1
See Comparison
NZ_OW849069.1
See Comparison
NZ_CP060907.1
See Comparison
NZ_CP060891.1
See Comparison
NZ_CP055008.1
See Comparison
NZ_CP091661.1
See Comparison
NZ_CP055036.1
See Comparison
NZ_CP085073.1
See Comparison
NZ_CP054194.1
See Comparison
NZ_CP080154.1
See Comparison
NZ_CP069700.1
See Comparison
NZ_CP076317.1
See Comparison
NZ_OU342905.1
See Comparison
NZ_CP069656.1
See Comparison
NZ_CP069676.1
See Comparison
NZ_CP035522.1
See Comparison
NZ_CP035726.1
See Comparison
NZ_CP035475.1
See Comparison
NZ_CP010877.1
See Comparison
NZ_CP035483.1
See Comparison
NZ_OY754414.1
See Comparison
NZ_OY757111.1
See Comparison
NZ_CP023506.1
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NZ_OY754420.1
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CP134917.1
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NZ_CP134357.1
See Comparison
NZ_AP027930.1
See Comparison
NZ_CP133460.1
See Comparison
NZ_OZ040273.1
See Comparison
NZ_OZ040722.1
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NZ_CP147108.1
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NZ_CP147104.1
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NZ_AP027665.1
See Comparison
NZ_CP148506.1
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NZ_CP148492.1
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NZ_AP027753.1
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NZ_CP047582.1
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NZ_CP054223.1
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NZ_OY839925.1
See Comparison
NZ_CP070905.1
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NZ_CP059720.1
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NZ_LR890656.1
See Comparison
NZ_CP069837.1
See Comparison
NZ_CP070182.1
See Comparison
NZ_CP055008.1
See Comparison
CP098968.1
See Comparison
CP099050.1
See Comparison
NZ_CP103486.1
See Comparison
NZ_OW849069.1
See Comparison
NZ_CP060913.1
See Comparison
NZ_CP060907.1
See Comparison
NZ_CP060891.1
See Comparison
NZ_CP055036.1
See Comparison
NZ_CP085073.1
See Comparison
NZ_CP054194.1
See Comparison
NZ_OU342905.1
See Comparison
NZ_CP080154.1
See Comparison
NZ_CP069700.1
See Comparison
NZ_CP076317.1
See Comparison
NZ_CP069656.1
See Comparison
NZ_CP069676.1
See Comparison
NZ_CP035726.1
See Comparison
NZ_CP010877.1
See Comparison
NZ_CP035522.1
See Comparison
NZ_CP035483.1
See Comparison
NZ_CP035475.1
See Comparison
NZ_CP023506.1
See Comparison
NZ_OY757111.1
See Comparison
CP134917.1
See Comparison
NZ_OY754414.1
See Comparison
NZ_OY754420.1
See Comparison
NZ_CP134357.1
See Comparison
NZ_AP027930.1
See Comparison
NZ_CP133460.1
See Comparison
NZ_AP027665.1
See Comparison
NZ_CP147108.1
See Comparison
NZ_CP147104.1
See Comparison
NZ_OZ040273.1
See Comparison
NZ_OZ040722.1
See Comparison
NZ_CP148506.1
See Comparison
NZ_CP148492.1
See Comparison
NZ_AP027753.1
See Comparison
NZ_OY839925.1
See Comparison
NZ_CP054194.1
See Comparison
NZ_CP054223.1
See Comparison
NZ_CP070905.1
See Comparison
NZ_CP069837.1
See Comparison
NZ_CP070182.1
See Comparison
NZ_LR890656.1
See Comparison
NZ_CP059720.1
See Comparison
CP098968.1
See Comparison
CP099050.1
See Comparison
NZ_CP060913.1
See Comparison
NZ_CP060907.1
See Comparison
NZ_CP060891.1
See Comparison
NZ_CP055008.1
See Comparison
NZ_CP055036.1
See Comparison
NZ_CP047582.1
See Comparison
NZ_CP103486.1
See Comparison
NZ_OW849069.1
See Comparison
NZ_CP080154.1
See Comparison
NZ_CP085073.1
See Comparison
NZ_CP069656.1
See Comparison
NZ_CP076317.1
See Comparison
NZ_OU342905.1
See Comparison
NZ_CP069676.1
See Comparison
NZ_CP035726.1
See Comparison
NZ_CP069700.1
See Comparison
NZ_CP010877.1
See Comparison
NZ_CP035522.1
See Comparison
NZ_CP035483.1
See Comparison
NZ_CP035475.1
See Comparison
CP134917.1
See Comparison
NZ_OY757111.1
See Comparison
NZ_CP134357.1
See Comparison
NZ_CP023506.1
See Comparison
NZ_OY754414.1
See Comparison
NZ_OY754420.1
See Comparison
NZ_AP027930.1
See Comparison
NZ_CP133460.1
See Comparison
NZ_OZ040273.1
See Comparison
NZ_OZ040722.1
See Comparison
NZ_CP047582.1
See Comparison
NZ_CP148506.1
See Comparison
NZ_CP148492.1
See Comparison
NZ_OY839925.1
See Comparison
NZ_CP147108.1
See Comparison
NZ_CP147104.1
See Comparison
NZ_AP027665.1
See Comparison
NZ_AP027753.1
See Comparison
NZ_CP054223.1
See Comparison
NZ_CP070905.1
See Comparison
NZ_CP069837.1
See Comparison
NZ_CP070182.1
See Comparison
NZ_LR890656.1
See Comparison
CP098968.1
See Comparison
NZ_CP059720.1
See Comparison
CP099050.1
See Comparison
Identical Plasmids
100% Sequence Identity
NZ_CP055036.1
Sequence
Accession
:
NZ_CP055036.1
Description
: Klebsiella pneumoniae strain SWHEFF_62 plasmid unnamed3, complete sequence
Source
: refseq
Created at NCBI
: Feb. 24, 2022
Host Taxonomy
Assigned Host
:
Klebsiella pneumoniae (573)
Superkingdom
:
Bacteria (2)
Phylum
:
Pseudomonadota (1224)
Class
:
Gammaproteobacteria (1236)
Order
:
Enterobacterales (91347)
Family
:
Enterobacteriaceae (543)
Genus
:
Klebsiella (570)
Species
:
Klebsiella_pneumoniae (573)
Strain
:
Biosample
Accession
:
13925588
GEOGRAPHICAL INFORMATION
Original Query
: 22.5N;114.1E
Original Query Type
: coordinates
Address
: 15, Geneva South Avenue, Valais, Kwu Tung Tin Sum, Kam Tsin, North District, New Territories, Hong Kong, 518032, China
Coordinates
(Lat/Lon): 22.50/114.10
ECOSYSTEM
Original Query
: Shek Wu Hui WWTPs_62 WWTPs effluent
Classification
: wastewater,wwtp
Host-associated Taxon
:
Visualization
PNG
JSON
NZ_CP076317.1
Sequence
Accession
:
NZ_CP076317.1
Description
: Escherichia coli strain Survcare045 plasmid unnamed9, complete sequence
Source
: refseq
Created at NCBI
: June 9, 2021
Host Taxonomy
Assigned Host
:
Escherichia coli (562)
Superkingdom
:
Bacteria (2)
Phylum
:
Pseudomonadota (1224)
Class
:
Gammaproteobacteria (1236)
Order
:
Enterobacterales (91347)
Family
:
Enterobacteriaceae (543)
Genus
:
Escherichia (561)
Species
:
Escherichia_coli (562)
Strain
:
Biosample
Accession
:
19349416
GEOGRAPHICAL INFORMATION
Original Query
: 50.04N;8.14E
Original Query Type
: coordinates
Address
: 1, Lärchenweg, Oberwalluf, Walluf, Rheingau-Taunus-Kreis, Hesse, 65396, Germany
Coordinates
(Lat/Lon): 50.04/8.14
ECOSYSTEM
Original Query
: Homo sapiens,Skin swab
Classification
: host_associated
Host-associated Taxon
:
Homo sapiens (
9606
)
DISEASE
Original Query
: Infection
DOID/SYMP
:
Disease infectious agent
(
DOID:0050117
)
A disease that is the consequence of the presence of pathogenic microbial agents, including pathogenic viruses, pathogenic bacteria, fungi, protozoa, multicellular parasites, and aberrant proteins known as prions.
Visualization
PNG
JSON
NZ_CP069700.1
Sequence
Accession
:
NZ_CP069700.1
Description
: Escherichia coli H20 strain MIN6 plasmid pMUB-MIN6-7, complete sequence
Source
: refseq
Created at NCBI
: March 26, 2021
Host Taxonomy
Assigned Host
:
Escherichia coli (2810409)
Superkingdom
:
Bacteria (2)
Phylum
:
Pseudomonadota (1224)
Class
:
Gammaproteobacteria (1236)
Order
:
Enterobacterales (91347)
Family
:
Enterobacteriaceae (543)
Genus
:
Escherichia (561)
Species
:
Escherichia_coli (562)
Strain
:
Biosample
Accession
:
17831481
GEOGRAPHICAL INFORMATION
Original Query
: 53.12523570N;23.15905989E
Original Query Type
: coordinates
Address
: Uniwersytecki Szpital Kliniczny, 24A, Marii Skłodowskiej-Curie, Osiedle Skłodowskiej, Piaski, Białystok, Podlaskie Voivodeship, 15-276, Poland
Coordinates
(Lat/Lon): 53.13/23.16
ECOSYSTEM
Original Query
: Homo sapiens
Classification
: host_associated
Host-associated Taxon
:
Homo sapiens (
9606
)
Visualization
PNG
JSON
NZ_LR890656.1
Sequence
Accession
:
NZ_LR890656.1
Description
: Escherichia coli strain MINF_2E isolate MINF_2E plasmid 6, complete sequence
Source
: refseq
Created at NCBI
: Oct. 30, 2020
Host Taxonomy
Assigned Host
:
Escherichia coli (562)
Superkingdom
:
Bacteria (2)
Phylum
:
Pseudomonadota (1224)
Class
:
Gammaproteobacteria (1236)
Order
:
Enterobacterales (91347)
Family
:
Enterobacteriaceae (543)
Genus
:
Escherichia (561)
Species
:
Escherichia_coli (562)
Strain
:
Biosample
Accession
:
4089407
GEOGRAPHICAL INFORMATION
Original Query
: Australia
Original Query Type
: name
Address
: Australia
Coordinates
(Lat/Lon): -24.78/134.76
ECOSYSTEM
Original Query
: Homo sapiens,blood
Classification
: blood,circulatory_system,host_associated
Host-associated Taxon
:
Homo sapiens (
9606
)
DISEASE
Original Query
: diseased
DOID/SYMP
:
Disease
(
DOID:4
)
A disease is a disposition (i) to undergo pathological processes that (ii) exists in an organism because of one or more disorders in that organism.
Visualization
PNG
JSON
NZ_CP054223.1
Sequence
Accession
:
NZ_CP054223.1
Description
: Escherichia coli strain EcPF18 plasmid p4, complete sequence
Source
: refseq
Created at NCBI
: June 25, 2020
Host Taxonomy
Assigned Host
:
Escherichia coli (562)
Superkingdom
:
Bacteria (2)
Phylum
:
Pseudomonadota (1224)
Class
:
Gammaproteobacteria (1236)
Order
:
Enterobacterales (91347)
Family
:
Enterobacteriaceae (543)
Genus
:
Escherichia (561)
Species
:
Escherichia_coli (562)
Strain
:
Biosample
Accession
:
15075997
GEOGRAPHICAL INFORMATION
Original Query
: 32.77N;96.79W
Original Query Type
: coordinates
Address
: 1611, Browder Street, Dallas, Dallas County, Texas, 75215, United States
Coordinates
(Lat/Lon): 32.77/-96.79
ECOSYSTEM
Original Query
: Homo sapiens,urine
Classification
: host_associated,urinary_system
Host-associated Taxon
:
Homo sapiens (
9606
)
DISEASE
Original Query
: Chronic Cystitis
DOID/SYMP
:
Chronic cystitis
(
DOID:1680
)
None
Visualization
PNG
JSON
NZ_CP147104.1
Sequence
Accession
:
NZ_CP147104.1
Description
: Escherichia coli strain KFu021 plasmid pKFu021_3, complete sequence
Source
: refseq
Created at NCBI
: April 22, 2024
Host Taxonomy
Assigned Host
:
Escherichia coli (562)
Superkingdom
:
Bacteria (2)
Phylum
:
Pseudomonadota (1224)
Class
:
Gammaproteobacteria (1236)
Order
:
Enterobacterales (91347)
Family
:
Enterobacteriaceae (543)
Genus
:
Escherichia (561)
Species
:
Escherichia_coli (562)
Strain
:
Biosample
Accession
:
39992790
GEOGRAPHICAL INFORMATION
Original Query
: Japan
Original Query Type
: name
Address
: Japan
Coordinates
(Lat/Lon): 36.57/139.24
ECOSYSTEM
Original Query
: environmental,river water
Classification
: aquatic,freshwater,river
Host-associated Taxon
:
Visualization
PNG
JSON
NZ_OY754414.1
Sequence
Accession
:
NZ_OY754414.1
Description
: Escherichia coli isolate F467 plasmid pF467-5, complete sequence
Source
: refseq
Created at NCBI
: Oct. 27, 2023
Host Taxonomy
Assigned Host
:
Escherichia coli (562)
Superkingdom
:
Bacteria (2)
Phylum
:
Pseudomonadota (1224)
Class
:
Gammaproteobacteria (1236)
Order
:
Enterobacterales (91347)
Family
:
Enterobacteriaceae (543)
Genus
:
Escherichia (561)
Species
:
Escherichia_coli (562)
Strain
:
Biosample
Accession
:
35792102
GEOGRAPHICAL INFORMATION
Original Query
: France
Original Query Type
: name
Address
: France
Coordinates
(Lat/Lon): 46.60/1.89
ECOSYSTEM
Original Query
: hen
Classification
: host_associated
Host-associated Taxon
:
Gallus gallus (
9031
)
Visualization
PNG
JSON
NZ_OY754420.1
Sequence
Accession
:
NZ_OY754420.1
Description
: Escherichia coli isolate F1267 plasmid pF1267-4, complete sequence
Source
: refseq
Created at NCBI
: Oct. 27, 2023
Host Taxonomy
Assigned Host
:
Escherichia coli (562)
Superkingdom
:
Bacteria (2)
Phylum
:
Pseudomonadota (1224)
Class
:
Gammaproteobacteria (1236)
Order
:
Enterobacterales (91347)
Family
:
Enterobacteriaceae (543)
Genus
:
Escherichia (561)
Species
:
Escherichia_coli (562)
Strain
:
Biosample
Accession
:
35792148
GEOGRAPHICAL INFORMATION
Original Query
: France
Original Query Type
: name
Address
: France
Coordinates
(Lat/Lon): 46.60/1.89
ECOSYSTEM
Original Query
: hen
Classification
: host_associated
Host-associated Taxon
:
Gallus gallus (
9031
)
Visualization
PNG
JSON
NZ_AP027930.1
Sequence
Accession
:
NZ_AP027930.1
Description
: Escherichia fergusonii strain 30038 plasmid p30038n4, complete sequence
Source
: refseq
Created at NCBI
: June 24, 2023
Host Taxonomy
Assigned Host
:
Escherichia fergusonii (564)
Superkingdom
:
Bacteria (2)
Phylum
:
Pseudomonadota (1224)
Class
:
Gammaproteobacteria (1236)
Order
:
Enterobacterales (91347)
Family
:
Enterobacteriaceae (543)
Genus
:
Escherichia (561)
Species
:
Escherichia_fergusonii (564)
Strain
:
Biosample
Accession
:
34077682
GEOGRAPHICAL INFORMATION
Original Query
: Japan
Original Query Type
: name
Address
: Japan
Coordinates
(Lat/Lon): 36.57/139.24
ECOSYSTEM
Original Query
: Homo sapiens,feces
Classification
: fecal,gastrointestinal_system,host_associated
Host-associated Taxon
:
Homo sapiens (
9606
)
Visualization
PNG
JSON
NZ_OW849069.1
Sequence
Accession
:
NZ_OW849069.1
Description
: Escherichia coli isolate 131 plasmid P5, complete sequence
Source
: refseq
Created at NCBI
: May 14, 2022
Host Taxonomy
Assigned Host
:
Escherichia coli (562)
Superkingdom
:
Bacteria (2)
Phylum
:
Pseudomonadota (1224)
Class
:
Gammaproteobacteria (1236)
Order
:
Enterobacterales (91347)
Family
:
Enterobacteriaceae (543)
Genus
:
Escherichia (561)
Species
:
Escherichia_coli (562)
Strain
:
Biosample
Accession
:
22316641
GEOGRAPHICAL INFORMATION
Original Query
: Spain
Original Query Type
: name
Address
: Spain
Coordinates
(Lat/Lon): 39.33/-4.84
ECOSYSTEM
Original Query
: Homo sapiens,Hospital Universitario Gregorio Maranon (Madrid)
Classification
: host_associated,location
Host-associated Taxon
:
Homo sapiens (
9606
)
DISEASE
Original Query
: diseased
DOID/SYMP
:
Disease
(
DOID:4
)
A disease is a disposition (i) to undergo pathological processes that (ii) exists in an organism because of one or more disorders in that organism.
Visualization
PNG
JSON
NZ_CP070905.1
Sequence
Accession
:
NZ_CP070905.1
Description
: Escherichia coli strain 99COLEC plasmid p99COLEC-3
Source
: refseq
Created at NCBI
: March 5, 2021
Host Taxonomy
Assigned Host
:
Escherichia coli (562)
Superkingdom
:
Bacteria (2)
Phylum
:
Pseudomonadota (1224)
Class
:
Gammaproteobacteria (1236)
Order
:
Enterobacterales (91347)
Family
:
Enterobacteriaceae (543)
Genus
:
Escherichia (561)
Species
:
Escherichia_coli (562)
Strain
:
Biosample
Accession
:
17807537
GEOGRAPHICAL INFORMATION
Original Query
: Singapore
Original Query Type
: name
Address
: Singapore
Coordinates
(Lat/Lon): 1.34/103.88
ECOSYSTEM
Original Query
: Homo sapiens,Bacterial pure culture,feces
Classification
: cell_culture,fecal,gastrointestinal_system,host_associated
Host-associated Taxon
:
Homo sapiens (
9606
)
Visualization
PNG
JSON
NZ_OU342905.1
Sequence
Accession
:
NZ_OU342905.1
Description
: Escherichia coli isolate IN07 plasmid 2, complete sequence
Source
: refseq
Created at NCBI
: July 6, 2021
Host Taxonomy
Assigned Host
:
Escherichia coli (562)
Superkingdom
:
Bacteria (2)
Phylum
:
Pseudomonadota (1224)
Class
:
Gammaproteobacteria (1236)
Order
:
Enterobacterales (91347)
Family
:
Enterobacteriaceae (543)
Genus
:
Escherichia (561)
Species
:
Escherichia_coli (562)
Strain
:
Biosample
Accession
:
19524094
GEOGRAPHICAL INFORMATION
Original Query
: United Kingdom
Original Query Type
: name
Address
: United Kingdom
Coordinates
(Lat/Lon): 54.70/-3.28
ECOSYSTEM
Original Query
: Homo sapiens,urine
Classification
: host_associated,urinary_system
Host-associated Taxon
:
Homo sapiens (
9606
)
DISEASE
Original Query
: Urinary tract infection
DOID/SYMP
:
Urinary tract infection
(
DOID:0080784
)
An urinary system disease that is characterized by an infection in any part of the urinary system, including the kidneys, ureters, bladder or urethra.
Visualization
PNG
JSON
NZ_CP147108.1
Sequence
Accession
:
NZ_CP147108.1
Description
: Escherichia coli strain KKa014 plasmid pKKa014_3, complete sequence
Source
: refseq
Created at NCBI
: April 22, 2024
Host Taxonomy
Assigned Host
:
Escherichia coli (562)
Superkingdom
:
Bacteria (2)
Phylum
:
Pseudomonadota (1224)
Class
:
Gammaproteobacteria (1236)
Order
:
Enterobacterales (91347)
Family
:
Enterobacteriaceae (543)
Genus
:
Escherichia (561)
Species
:
Escherichia_coli (562)
Strain
:
Biosample
Accession
:
39992789
GEOGRAPHICAL INFORMATION
Original Query
: Japan
Original Query Type
: name
Address
: Japan
Coordinates
(Lat/Lon): 36.57/139.24
ECOSYSTEM
Original Query
: environmental,river water
Classification
: aquatic,freshwater,river
Host-associated Taxon
:
Visualization
PNG
JSON
NZ_OY839925.1
Sequence
Accession
:
NZ_OY839925.1
Description
: Escherichia coli isolate F1059 plasmid pF1059-4, complete sequence
Source
: refseq
Created at NCBI
: Dec. 3, 2023
Host Taxonomy
Assigned Host
:
Escherichia coli (562)
Superkingdom
:
Bacteria (2)
Phylum
:
Pseudomonadota (1224)
Class
:
Gammaproteobacteria (1236)
Order
:
Enterobacterales (91347)
Family
:
Enterobacteriaceae (543)
Genus
:
Escherichia (561)
Species
:
Escherichia_coli (562)
Strain
:
Biosample
Accession
:
35792135
GEOGRAPHICAL INFORMATION
Original Query
: France
Original Query Type
: name
Address
: France
Coordinates
(Lat/Lon): 46.60/1.89
ECOSYSTEM
Original Query
: hen
Classification
: host_associated
Host-associated Taxon
:
Gallus gallus (
9031
)
Visualization
PNG
JSON
NZ_OY757111.1
Sequence
Accession
:
NZ_OY757111.1
Description
: Escherichia coli isolate S143 plasmid pS143-7, complete sequence
Source
: refseq
Created at NCBI
: Nov. 3, 2023
Host Taxonomy
Assigned Host
:
Escherichia coli (562)
Superkingdom
:
Bacteria (2)
Phylum
:
Pseudomonadota (1224)
Class
:
Gammaproteobacteria (1236)
Order
:
Enterobacterales (91347)
Family
:
Enterobacteriaceae (543)
Genus
:
Escherichia (561)
Species
:
Escherichia_coli (562)
Strain
:
Biosample
Accession
:
35792016
GEOGRAPHICAL INFORMATION
Original Query
: France
Original Query Type
: name
Address
: France
Coordinates
(Lat/Lon): 46.60/1.89
ECOSYSTEM
Original Query
: None
Classification
: None
Host-associated Taxon
:
Visualization
PNG
JSON
NZ_OZ040273.1
Sequence
Accession
:
NZ_OZ040273.1
Description
: Escherichia coli isolate 30821_1#88 plasmid 7, complete sequence
Source
: refseq
Created at NCBI
: May 15, 2024
Host Taxonomy
Assigned Host
:
Escherichia coli (562)
Superkingdom
:
Bacteria (2)
Phylum
:
Pseudomonadota (1224)
Class
:
Gammaproteobacteria (1236)
Order
:
Enterobacterales (91347)
Family
:
Enterobacteriaceae (543)
Genus
:
Escherichia (561)
Species
:
Escherichia_coli (562)
Strain
:
Biosample
Accession
:
19793578
GEOGRAPHICAL INFORMATION
Original Query
: None
Original Query Type
: None
Address
: None
Coordinates
(Lat/Lon):
ECOSYSTEM
Original Query
: None
Classification
: None
Host-associated Taxon
:
Visualization
PNG
JSON
NZ_OZ040722.1
Sequence
Accession
:
NZ_OZ040722.1
Description
: Escherichia coli isolate 30224_1#48 plasmid 7, complete sequence
Source
: refseq
Created at NCBI
: May 15, 2024
Host Taxonomy
Assigned Host
:
Escherichia coli (562)
Superkingdom
:
Bacteria (2)
Phylum
:
Pseudomonadota (1224)
Class
:
Gammaproteobacteria (1236)
Order
:
Enterobacterales (91347)
Family
:
Enterobacteriaceae (543)
Genus
:
Escherichia (561)
Species
:
Escherichia_coli (562)
Strain
:
Biosample
Accession
:
19793532
GEOGRAPHICAL INFORMATION
Original Query
: None
Original Query Type
: None
Address
: None
Coordinates
(Lat/Lon):
ECOSYSTEM
Original Query
: None
Classification
: None
Host-associated Taxon
:
Visualization
PNG
JSON
NZ_CP148506.1
Sequence
Accession
:
NZ_CP148506.1
Description
: Escherichia coli strain Z1323CEC0002 plasmid pZ1323CEC0002-9, complete sequence
Source
: refseq
Created at NCBI
: April 15, 2024
Host Taxonomy
Assigned Host
:
Escherichia coli (562)
Superkingdom
:
Bacteria (2)
Phylum
:
Pseudomonadota (1224)
Class
:
Gammaproteobacteria (1236)
Order
:
Enterobacterales (91347)
Family
:
Enterobacteriaceae (543)
Genus
:
Escherichia (561)
Species
:
Escherichia_coli (562)
Strain
:
NZ_CP148492.1
Sequence
Accession
:
NZ_CP148492.1
Description
: Escherichia coli strain Z1323CEC0004 plasmid pZ1323CEC0004-10, complete sequence
Source
: refseq
Created at NCBI
: April 15, 2024
Host Taxonomy
Assigned Host
:
Escherichia coli (562)
Superkingdom
:
Bacteria (2)
Phylum
:
Pseudomonadota (1224)
Class
:
Gammaproteobacteria (1236)
Order
:
Enterobacterales (91347)
Family
:
Enterobacteriaceae (543)
Genus
:
Escherichia (561)
Species
:
Escherichia_coli (562)
Strain
:
CP134917.1
Sequence
Accession
:
CP134917.1
Description
: Escherichia coli strain 3263 plasmid pMB2666_6, complete sequence
Source
: insd
Created at NCBI
: Sept. 27, 2023
Host Taxonomy
Assigned Host
:
Escherichia coli (562)
Superkingdom
:
Bacteria (2)
Phylum
:
Pseudomonadota (1224)
Class
:
Gammaproteobacteria (1236)
Order
:
Enterobacterales (91347)
Family
:
Enterobacteriaceae (543)
Genus
:
Escherichia (561)
Species
:
Escherichia_coli (562)
Strain
:
Biosample
Accession
:
32977707
GEOGRAPHICAL INFORMATION
Original Query
: 29.7068N;95.3971W
Original Query Type
: coordinates
Address
: University of Texas MD Anderson Cancer Center, 1515, Holcombe Boulevard, Texas Medical Center, Houston, Harris County, Texas, 77030, United States
Coordinates
(Lat/Lon): 29.71/-95.40
ECOSYSTEM
Original Query
: Homo sapiens,blood
Classification
: blood,circulatory_system,host_associated
Host-associated Taxon
:
Homo sapiens (
9606
)
DISEASE
Original Query
: bacteremia
DOID/SYMP
:
Bacterial infectious disease
(
DOID:104
)
A disease by infectious agent that results_in infection, has_material_basis_in Bacteria.
Has_material_basis_in: ['bacteria']
Visualization
PNG
JSON
CP098968.1
Sequence
Accession
:
CP098968.1
Description
: Escherichia coli strain RHB46-C23 plasmid unnamed3, complete sequence
Source
: insd
Created at NCBI
: April 13, 2023
Host Taxonomy
Assigned Host
:
Escherichia coli (562)
Superkingdom
:
Bacteria (2)
Phylum
:
Pseudomonadota (1224)
Class
:
Gammaproteobacteria (1236)
Order
:
Enterobacterales (91347)
Family
:
Enterobacteriaceae (543)
Genus
:
Escherichia (561)
Species
:
Escherichia_coli (562)
Strain
:
Biosample
Accession
:
15488717
GEOGRAPHICAL INFORMATION
Original Query
: United Kingdom
Original Query Type
: name
Address
: United Kingdom
Coordinates
(Lat/Lon): 54.70/-3.28
ECOSYSTEM
Original Query
: culture,Pooled faeces sample collected from floor of poultry farm
Classification
: cell_culture,fecal,gastrointestinal_system,host_associated
Host-associated Taxon
:
Gallus gallus (
9031
)
Visualization
PNG
JSON
CP099050.1
Sequence
Accession
:
CP099050.1
Description
: Escherichia coli strain RHB44-C14 plasmid unnamed4, complete sequence
Source
: insd
Created at NCBI
: April 13, 2023
Host Taxonomy
Assigned Host
:
Escherichia coli (562)
Superkingdom
:
Bacteria (2)
Phylum
:
Pseudomonadota (1224)
Class
:
Gammaproteobacteria (1236)
Order
:
Enterobacterales (91347)
Family
:
Enterobacteriaceae (543)
Genus
:
Escherichia (561)
Species
:
Escherichia_coli (562)
Strain
:
Biosample
Accession
:
15488664
GEOGRAPHICAL INFORMATION
Original Query
: United Kingdom
Original Query Type
: name
Address
: United Kingdom
Coordinates
(Lat/Lon): 54.70/-3.28
ECOSYSTEM
Original Query
: culture,Pooled faeces sample collected from floor of poultry farm
Classification
: cell_culture,fecal,gastrointestinal_system,host_associated
Host-associated Taxon
:
Gallus gallus (
9031
)
Visualization
PNG
JSON
Plasmid Visualization
JSON
GENBANK
NUCCORE ACC
Source
Element Name
Display
Sequence
Favorite
NUCCORE ACC
Source
Element Name
Display
Sequence
Favorite
Annotations
based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC
Gene
Locus Tag
Product
Protein id
Codon Start
Translation Table
GO process
NUCCORE ACC
Gene
Locus Tag
Product
Protein id
Codon Start
Translation Table
GO process
Typing
based on MOB-Typer and Plasmid Multilocus Sequencing Typing (
PMLST
)
NUCCORE ACC
Contigs
md5 hash
Replicon Type
Relaxase Type
MPF Type
OriT Type
Predicted Mobility
Primary Cluster ID
Secondary Cluster ID
Observed Host Range Ncbi Rank
Observed Host Range Ncbi Name
Mash Nearest Neighbor
Mash Neighbor Distance
Mash Neighbor Identification
Reported Host Range Lit Rank
Reported Host Range Lit Name
Replicon Type Accession
Relaxase Type Accession
MPF Type Accession
OriT Type Accession
Associated PMID(s)
NUCCORE ACC
Contigs
md5 hash
Replicon Type
Relaxase Type
MPF Type
OriT Type
Predicted Mobility
Primary Cluster ID
Secondary Cluster ID
Observed Host Range Ncbi Rank
Observed Host Range Ncbi Name
Mash Nearest Neighbor
Mash Neighbor Distance
Mash Neighbor Identification
Reported Host Range Lit Rank
Reported Host Range Lit Name
Replicon Type Accession
Relaxase Type Accession
MPF Type Accession
OriT Type Accession
Associated PMID(s)
BLAST results of detected typing markers by MOB-type
NUCCORE ACC
biomarker
MOB-suite ID
Element
Start
End
Strand
Identity
Coverage
Evalue
Bitscore
NUCCORE ACC
biomarker
MOB-suite ID
Element
Start
End
Strand
Identity
Coverage
Evalue
Bitscore