Plasmid NZ_CP054194.1

Sequence

Nucleotide Information

Accession NZ_CP054194.1
Description Escherichia coli strain TH9F11 plasmid pHNTH9F11-3, complete sequence
Source refseq
Topology circular
Length 1506 bp
GC Content 0.50 %
Created at NCBI Jan. 20, 2022



Assembly

Genome Data Information

Accession GCF_021498045.1
Assembly Coverage 200


Biosample

Curated Collection Information
Accession 15062838

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query China,Guangzhou
Original Query Type name
Coordinates (Lat/Lon) 23.13/113.26
Address China,Guangzhou

ECOSYSTEM
Original Query fish,feces
Classification fecal,gastrointestinal_system,host_associated
Host-associated Taxon

DISEASE
Original Query None
DOID/SYMP

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

CP134917.1 See Comparison
NZ_CP133460.1 See Comparison
NZ_AP027930.1 See Comparison
NZ_OZ040273.1 See Comparison
NZ_OZ040722.1 See Comparison
NZ_CP147108.1 See Comparison
NZ_CP147104.1 See Comparison
NZ_CP148506.1 See Comparison
NZ_CP148492.1 See Comparison
NZ_OY839925.1 See Comparison
NZ_CP054223.1 See Comparison
NZ_CP070905.1 See Comparison
NZ_CP069837.1 See Comparison
NZ_CP070182.1 See Comparison
CP099050.1 See Comparison
NZ_LR890656.1 See Comparison
NZ_CP059720.1 See Comparison
NZ_CP060913.1 See Comparison
CP098968.1 See Comparison
NZ_OW849069.1 See Comparison
NZ_CP060891.1 See Comparison
NZ_CP091661.1 See Comparison
NZ_CP060907.1 See Comparison
NZ_CP055008.1 See Comparison
NZ_CP055036.1 See Comparison
NZ_OU342905.1 See Comparison
NZ_CP080154.1 See Comparison
NZ_CP010877.1 See Comparison
NZ_CP076317.1 See Comparison
NZ_CP069700.1 See Comparison
NZ_CP069656.1 See Comparison
NZ_OY757111.1 See Comparison
NZ_CP023506.1 See Comparison
NZ_CP035726.1 See Comparison
NZ_CP035475.1 See Comparison
NZ_CP035522.1 See Comparison
NZ_CP035483.1 See Comparison
NZ_CP133460.1 See Comparison
CP134917.1 See Comparison
NZ_OY754414.1 See Comparison
NZ_OY754420.1 See Comparison
NZ_CP147108.1 See Comparison
NZ_AP027930.1 See Comparison
NZ_OZ040273.1 See Comparison
NZ_OZ040722.1 See Comparison
NZ_CP147104.1 See Comparison
NZ_CP069837.1 See Comparison
NZ_CP148506.1 See Comparison
NZ_CP148492.1 See Comparison
NZ_OY839925.1 See Comparison
NZ_CP054223.1 See Comparison
NZ_CP070905.1 See Comparison
NZ_CP070182.1 See Comparison
CP098968.1 See Comparison
NZ_LR890656.1 See Comparison
NZ_CP059720.1 See Comparison
CP099050.1 See Comparison
NZ_CP091661.1 See Comparison
NZ_CP060891.1 See Comparison
NZ_OW849069.1 See Comparison
NZ_CP060913.1 See Comparison
NZ_OU342905.1 See Comparison
NZ_CP060907.1 See Comparison
NZ_CP055008.1 See Comparison
NZ_CP055036.1 See Comparison
NZ_CP080154.1 See Comparison
NZ_OY757111.1 See Comparison
NZ_CP076317.1 See Comparison
NZ_CP069700.1 See Comparison
NZ_CP069656.1 See Comparison
NZ_CP010877.1 See Comparison
NZ_CP035726.1 See Comparison
NZ_CP035475.1 See Comparison
NZ_CP035522.1 See Comparison
NZ_CP035483.1 See Comparison
NZ_CP023506.1 See Comparison
CP134917.1 See Comparison
NZ_OY754414.1 See Comparison
NZ_OY754420.1 See Comparison
NZ_OZ040273.1 See Comparison
NZ_CP133460.1 See Comparison
NZ_AP027930.1 See Comparison
NZ_OZ040722.1 See Comparison
NZ_CP148506.1 See Comparison
NZ_CP147108.1 See Comparison
NZ_CP147104.1 See Comparison
NZ_CP148492.1 See Comparison
NZ_OY839925.1 See Comparison
NZ_CP054223.1 See Comparison
NZ_LR890656.1 See Comparison
NZ_CP069837.1 See Comparison
NZ_CP070182.1 See Comparison
NZ_CP070905.1 See Comparison
CP098968.1 See Comparison
NZ_CP059720.1 See Comparison
CP099050.1 See Comparison
NZ_CP055008.1 See Comparison
NZ_CP091661.1 See Comparison
NZ_OW849069.1 See Comparison
NZ_CP060913.1 See Comparison
NZ_CP060907.1 See Comparison
NZ_CP060891.1 See Comparison
NZ_CP055036.1 See Comparison
NZ_CP080154.1 See Comparison
NZ_CP023506.1 See Comparison
NZ_OU342905.1 See Comparison
NZ_CP076317.1 See Comparison
NZ_CP069700.1 See Comparison
NZ_CP069656.1 See Comparison
NZ_CP010877.1 See Comparison
NZ_CP035726.1 See Comparison
NZ_CP035475.1 See Comparison
NZ_CP035522.1 See Comparison
NZ_CP035483.1 See Comparison
CP134917.1 See Comparison
NZ_OY757111.1 See Comparison
NZ_OY754414.1 See Comparison
NZ_OY754420.1 See Comparison
NZ_CP070905.1 See Comparison
NZ_CP133460.1 See Comparison
NZ_CP147108.1 See Comparison
NZ_CP147104.1 See Comparison
NZ_CP054223.1 See Comparison
NZ_AP027930.1 See Comparison
NZ_OZ040273.1 See Comparison
NZ_OZ040722.1 See Comparison
NZ_CP148506.1 See Comparison
NZ_CP148492.1 See Comparison
NZ_OY839925.1 See Comparison
NZ_CP091661.1 See Comparison
NZ_LR890656.1 See Comparison
NZ_OW849069.1 See Comparison
NZ_CP060913.1 See Comparison
NZ_CP060907.1 See Comparison
NZ_CP060891.1 See Comparison
NZ_CP069837.1 See Comparison
NZ_CP070182.1 See Comparison
NZ_CP059720.1 See Comparison
CP098968.1 See Comparison
CP099050.1 See Comparison
NZ_OU342905.1 See Comparison
NZ_CP055008.1 See Comparison
NZ_CP055036.1 See Comparison
NZ_CP080154.1 See Comparison
NZ_CP010877.1 See Comparison
NZ_CP069700.1 See Comparison
NZ_CP069656.1 See Comparison
NZ_CP076317.1 See Comparison
NZ_OY754420.1 See Comparison
NZ_CP035475.1 See Comparison
NZ_CP035522.1 See Comparison
NZ_CP035483.1 See Comparison
NZ_CP023506.1 See Comparison
NZ_CP035726.1 See Comparison
NZ_AP027930.1 See Comparison
NZ_OY757111.1 See Comparison
CP134917.1 See Comparison
NZ_OY754414.1 See Comparison
NZ_CP133460.1 See Comparison
NZ_OY839925.1 See Comparison
NZ_OZ040273.1 See Comparison
NZ_OZ040722.1 See Comparison
NZ_CP148506.1 See Comparison
NZ_CP148492.1 See Comparison
NZ_CP147108.1 See Comparison
NZ_CP147104.1 See Comparison
NZ_CP069837.1 See Comparison
NZ_CP054223.1 See Comparison
NZ_CP070905.1 See Comparison
NZ_CP070182.1 See Comparison
CP098968.1 See Comparison
NZ_CP059720.1 See Comparison
NZ_LR890656.1 See Comparison
CP099050.1 See Comparison
NZ_OW849069.1 See Comparison
NZ_CP055008.1 See Comparison
NZ_CP060913.1 See Comparison
NZ_CP060907.1 See Comparison
NZ_CP060891.1 See Comparison
NZ_CP091661.1 See Comparison
NZ_CP055036.1 See Comparison
NZ_OU342905.1 See Comparison
NZ_CP076317.1 See Comparison
NZ_CP080154.1 See Comparison
NZ_CP035522.1 See Comparison
NZ_CP069700.1 See Comparison
NZ_CP069656.1 See Comparison
NZ_CP010877.1 See Comparison
NZ_CP035483.1 See Comparison
NZ_OY754414.1 See Comparison
NZ_CP035726.1 See Comparison
NZ_CP035475.1 See Comparison
NZ_CP023506.1 See Comparison
NZ_OY757111.1 See Comparison
NZ_OY754420.1 See Comparison
NZ_OZ040273.1 See Comparison
CP134917.1 See Comparison
NZ_CP133460.1 See Comparison
NZ_AP027930.1 See Comparison
NZ_OZ040722.1 See Comparison
NZ_CP070905.1 See Comparison
NZ_CP148506.1 See Comparison
NZ_CP148492.1 See Comparison
NZ_OY839925.1 See Comparison
NZ_CP147108.1 See Comparison
NZ_CP147104.1 See Comparison
NZ_CP054223.1 See Comparison
NZ_CP060891.1 See Comparison
NZ_CP070182.1 See Comparison
NZ_LR890656.1 See Comparison
CP099050.1 See Comparison
NZ_OW849069.1 See Comparison
NZ_CP069837.1 See Comparison
NZ_CP059720.1 See Comparison
CP098968.1 See Comparison
NZ_CP060913.1 See Comparison
NZ_CP060907.1 See Comparison
NZ_CP054194.1 See Comparison
NZ_CP091661.1 See Comparison
NZ_CP055008.1 See Comparison
NZ_CP055036.1 See Comparison
NZ_CP080154.1 See Comparison
NZ_CP076317.1 See Comparison
NZ_OU342905.1 See Comparison
NZ_CP069700.1 See Comparison
NZ_CP069656.1 See Comparison
NZ_CP023506.1 See Comparison
NZ_CP010877.1 See Comparison
NZ_CP035522.1 See Comparison
NZ_CP035483.1 See Comparison
NZ_CP035726.1 See Comparison
NZ_CP035475.1 See Comparison
NZ_OY757111.1 See Comparison
NZ_OY754414.1 See Comparison
NZ_OY754420.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore