Plasmid NZ_CP055008.1

Sequence

Nucleotide Information

Accession	NZ_CP055008.1
Description	Klebsiella pneumoniae strain STIN_77 plasmid unnamed3, complete sequence
Source	refseq
Topology	circular
Length	1506 bp
GC Content	0.50 %
Created at NCBI	Feb. 24, 2022

Host Taxonomy

According to NCBI Taxonomy

Assigned Host	Klebsiella pneumoniae (573)

Lineage

Superkingdom	Bacteria (2)
Phylum	Pseudomonadota (1224)
Class	Gammaproteobacteria (1236)
Order	Enterobacterales (91347)
Family	Enterobacteriaceae (543)
Genus	Klebsiella (570)
Species	Klebsiella_pneumoniae (573)
Strain

Assembly

Genome Data Information

Accession	GCF_022353825.1
Assembly Coverage	200

Biosample

Curated Collection Information

Accession	13925541

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION

Original Query	22.4N;114.2E
Original Query Type	coordinates
Coordinates (Lat/Lon)	22.40/114.20
Address	Lok Lam Road, Lok Lo Ha, Pat Tsz Wo, Lok Lo Ha Village, Sha Tin District, New Territories, Hong Kong, China

ECOSYSTEM

Original Query	Shatin WWTPs_77 WWTPs influent
Classification	wastewater,wwtp
Host-associated Taxon

DISEASE

Original Query	None
DOID/SYMP

Visualization

Plasmids from same Biosample

Similar Plasmids

based on Mash distance

NZ_OY839925.1	See Comparison
NZ_CP054223.1	See Comparison
NZ_CP070905.1	See Comparison
NZ_CP069837.1	See Comparison
NZ_CP070182.1	See Comparison
NZ_LR890656.1	See Comparison
NZ_CP059720.1	See Comparison
CP098968.1	See Comparison
CP099050.1	See Comparison
NZ_CP060913.1	See Comparison
NZ_OW849069.1	See Comparison
NZ_CP060891.1	See Comparison
NZ_CP060907.1	See Comparison
NZ_CP055036.1	See Comparison
NZ_CP091661.1	See Comparison
NZ_CP054194.1	See Comparison
NZ_CP080154.1	See Comparison
NZ_CP069700.1	See Comparison
NZ_OU342905.1	See Comparison
NZ_CP076317.1	See Comparison
NZ_CP069656.1	See Comparison
NZ_CP035726.1	See Comparison
NZ_CP010877.1	See Comparison
NZ_CP035475.1	See Comparison
NZ_CP035522.1	See Comparison
NZ_CP035483.1	See Comparison
NZ_CP023506.1	See Comparison
NZ_OY757111.1	See Comparison
NZ_OY754414.1	See Comparison
NZ_OY754420.1	See Comparison
CP134917.1	See Comparison
NZ_AP027930.1	See Comparison
NZ_CP133460.1	See Comparison
NZ_CP069837.1	See Comparison
NZ_OZ040273.1	See Comparison
NZ_OZ040722.1	See Comparison
NZ_CP147108.1	See Comparison
NZ_CP147104.1	See Comparison
NZ_CP148506.1	See Comparison
NZ_CP148492.1	See Comparison
NZ_CP070905.1	See Comparison
NZ_OY839925.1	See Comparison
NZ_CP054223.1	See Comparison
NZ_CP070182.1	See Comparison
NZ_CP060891.1	See Comparison
CP098968.1	See Comparison
CP099050.1	See Comparison
NZ_CP060913.1	See Comparison
NZ_CP060907.1	See Comparison
NZ_LR890656.1	See Comparison
NZ_CP059720.1	See Comparison
NZ_OW849069.1	See Comparison
NZ_CP076317.1	See Comparison
NZ_CP054194.1	See Comparison
NZ_CP080154.1	See Comparison
NZ_CP091661.1	See Comparison
NZ_CP055036.1	See Comparison
NZ_CP010877.1	See Comparison
NZ_OU342905.1	See Comparison
NZ_CP069700.1	See Comparison
NZ_CP069656.1	See Comparison
NZ_CP035726.1	See Comparison
NZ_CP035475.1	See Comparison
NZ_CP035522.1	See Comparison
NZ_CP035483.1	See Comparison
NZ_OY757111.1	See Comparison
NZ_CP023506.1	See Comparison
NZ_OY754414.1	See Comparison
NZ_OY754420.1	See Comparison
CP134917.1	See Comparison
NZ_CP133460.1	See Comparison
NZ_OY839925.1	See Comparison
NZ_AP027930.1	See Comparison
NZ_OZ040273.1	See Comparison
NZ_OZ040722.1	See Comparison
NZ_CP147108.1	See Comparison
NZ_CP147104.1	See Comparison
NZ_CP148506.1	See Comparison
NZ_CP148492.1	See Comparison
NZ_CP054223.1	See Comparison
CP098968.1	See Comparison
NZ_CP070905.1	See Comparison
NZ_CP059720.1	See Comparison
NZ_CP069837.1	See Comparison
NZ_CP070182.1	See Comparison
NZ_LR890656.1	See Comparison
CP099050.1	See Comparison
NZ_OW849069.1	See Comparison
NZ_CP060913.1	See Comparison
NZ_CP060907.1	See Comparison
NZ_CP060891.1	See Comparison
NZ_CP091661.1	See Comparison
NZ_CP076317.1	See Comparison
NZ_CP054194.1	See Comparison
NZ_OU342905.1	See Comparison
NZ_CP055036.1	See Comparison
NZ_CP080154.1	See Comparison
NZ_CP010877.1	See Comparison
NZ_CP069700.1	See Comparison
NZ_CP069656.1	See Comparison
NZ_CP035726.1	See Comparison
NZ_CP035475.1	See Comparison
NZ_CP035522.1	See Comparison
NZ_CP035483.1	See Comparison
NZ_CP023506.1	See Comparison
CP134917.1	See Comparison
NZ_OY757111.1	See Comparison
NZ_OY754414.1	See Comparison
NZ_OY754420.1	See Comparison
NZ_CP133460.1	See Comparison
NZ_AP027930.1	See Comparison
NZ_CP070905.1	See Comparison
NZ_OY839925.1	See Comparison
NZ_CP054223.1	See Comparison
NZ_OZ040273.1	See Comparison
NZ_OZ040722.1	See Comparison
NZ_CP147108.1	See Comparison
NZ_CP147104.1	See Comparison
NZ_CP148506.1	See Comparison
NZ_CP148492.1	See Comparison
NZ_LR890656.1	See Comparison
NZ_CP069837.1	See Comparison
NZ_CP070182.1	See Comparison
NZ_OW849069.1	See Comparison
CP098968.1	See Comparison
CP099050.1	See Comparison
NZ_CP059720.1	See Comparison
NZ_CP060913.1	See Comparison
NZ_CP060907.1	See Comparison
NZ_CP060891.1	See Comparison
NZ_OU342905.1	See Comparison
NZ_CP091661.1	See Comparison
NZ_CP055036.1	See Comparison
NZ_CP054194.1	See Comparison
NZ_CP080154.1	See Comparison
NZ_OY757111.1	See Comparison
NZ_CP069700.1	See Comparison
NZ_CP069656.1	See Comparison
NZ_CP010877.1	See Comparison
NZ_CP035475.1	See Comparison
NZ_CP035522.1	See Comparison
NZ_CP035483.1	See Comparison
NZ_CP076317.1	See Comparison
NZ_CP035726.1	See Comparison
NZ_CP023506.1	See Comparison
CP134917.1	See Comparison
NZ_OY754414.1	See Comparison
NZ_OY754420.1	See Comparison
NZ_OZ040273.1	See Comparison
NZ_CP133460.1	See Comparison
NZ_AP027930.1	See Comparison
NZ_OZ040722.1	See Comparison
NZ_CP148506.1	See Comparison
NZ_CP147108.1	See Comparison
NZ_CP147104.1	See Comparison
NZ_CP148492.1	See Comparison
NZ_CP054223.1	See Comparison
NZ_OY839925.1	See Comparison
NZ_CP069837.1	See Comparison
NZ_CP070905.1	See Comparison
NZ_CP070182.1	See Comparison
NZ_LR890656.1	See Comparison
NZ_CP059720.1	See Comparison
CP098968.1	See Comparison
CP099050.1	See Comparison
NZ_CP010877.1	See Comparison
NZ_CP060913.1	See Comparison
NZ_CP060907.1	See Comparison
NZ_CP060891.1	See Comparison
NZ_CP069700.1	See Comparison
NZ_CP069656.1	See Comparison
NZ_OW849069.1	See Comparison
NZ_CP091661.1	See Comparison
NZ_CP055036.1	See Comparison
NZ_CP054194.1	See Comparison
NZ_CP080154.1	See Comparison
NZ_OU342905.1	See Comparison
NZ_CP076317.1	See Comparison
NZ_CP035726.1	See Comparison
NZ_CP035522.1	See Comparison
NZ_CP035483.1	See Comparison
NZ_CP035475.1	See Comparison
NZ_CP023506.1	See Comparison
NZ_CP148506.1	See Comparison
NZ_OY757111.1	See Comparison
NZ_OY754414.1	See Comparison
NZ_OY754420.1	See Comparison
NZ_AP027930.1	See Comparison
NZ_OZ040273.1	See Comparison
NZ_OZ040722.1	See Comparison
CP134917.1	See Comparison
NZ_CP133460.1	See Comparison
NZ_CP148492.1	See Comparison
NZ_OY839925.1	See Comparison
NZ_CP147108.1	See Comparison
NZ_CP147104.1	See Comparison
CP098968.1	See Comparison
NZ_CP069837.1	See Comparison
NZ_LR890656.1	See Comparison
NZ_CP054223.1	See Comparison
NZ_CP070905.1	See Comparison
NZ_CP070182.1	See Comparison
NZ_CP059720.1	See Comparison
CP099050.1	See Comparison
NZ_OW849069.1	See Comparison
NZ_CP076317.1	See Comparison
NZ_CP060913.1	See Comparison
NZ_CP060907.1	See Comparison
NZ_CP091661.1	See Comparison
NZ_CP054194.1	See Comparison
NZ_CP080154.1	See Comparison
NZ_CP060891.1	See Comparison
NZ_CP055008.1	See Comparison
NZ_CP055036.1	See Comparison
NZ_OU342905.1	See Comparison
NZ_CP069700.1	See Comparison
NZ_CP069656.1	See Comparison
NZ_CP010877.1	See Comparison
NZ_CP023506.1	See Comparison
NZ_CP035726.1	See Comparison
NZ_CP035475.1	See Comparison
NZ_CP035522.1	See Comparison
NZ_CP035483.1	See Comparison
NZ_OZ040722.1	See Comparison
NZ_OY757111.1	See Comparison
NZ_OY754414.1	See Comparison
NZ_OY754420.1	See Comparison
NZ_OZ040273.1	See Comparison
CP134917.1	See Comparison
NZ_CP133460.1	See Comparison
NZ_AP027930.1	See Comparison
NZ_CP147108.1	See Comparison
NZ_CP147104.1	See Comparison
NZ_CP148506.1	See Comparison
NZ_CP148492.1	See Comparison

Identical Plasmids

100% Sequence Identity

NZ_CP133460.1

Sequence

Accession: NZ_CP133460.1
Description: Escherichia coli strain CREC8 plasmid p8
Source: refseq
Created at NCBI: Sept. 8, 2023

Host Taxonomy

Assigned Host: Escherichia coli (562)

Superkingdom : Bacteria (2)
Phylum : Pseudomonadota (1224)
Class : Gammaproteobacteria (1236)
Order : Enterobacterales (91347)
Family : Enterobacteriaceae (543)
Genus : Escherichia (561)
Species : Escherichia_coli (562)
Strain:

Biosample

Accession: 37004833

GEOGRAPHICAL INFORMATION

Original Query: China,Hangzhou
Original Query Type: name
Address: China,Hangzhou
Coordinates (Lat/Lon): 30.25/120.21

ECOSYSTEM

Original Query: Homo sapiens,human feces,feces
Classification: fecal,gastrointestinal_system,host_associated
Host-associated Taxon:
- Homo sapiens (9606)

Visualization

NZ_CP060913.1

Sequence

Accession: NZ_CP060913.1
Description: Escherichia coli strain EC19 plasmid pEC19-6, complete sequence
Source: refseq
Created at NCBI: March 15, 2022

Host Taxonomy

Assigned Host: Escherichia coli (562)

Superkingdom : Bacteria (2)
Phylum : Pseudomonadota (1224)
Class : Gammaproteobacteria (1236)
Order : Enterobacterales (91347)
Family : Enterobacteriaceae (543)
Genus : Escherichia (561)
Species : Escherichia_coli (562)
Strain:

Biosample

Accession: 15904661

GEOGRAPHICAL INFORMATION

Original Query: China,Hangzhou
Original Query Type: name
Address: China,Hangzhou
Coordinates (Lat/Lon): 30.25/120.21

ECOSYSTEM

Original Query: Homo sapiens,urine
Classification: host_associated,urinary_system
Host-associated Taxon:
- Homo sapiens (9606)

Visualization

NZ_CP060907.1

Sequence

Accession: NZ_CP060907.1
Description: Escherichia coli strain EC20 plasmid pEC20-6, complete sequence
Source: refseq
Created at NCBI: March 15, 2022

Host Taxonomy

Assigned Host: Escherichia coli (562)

Superkingdom : Bacteria (2)
Phylum : Pseudomonadota (1224)
Class : Gammaproteobacteria (1236)
Order : Enterobacterales (91347)
Family : Enterobacteriaceae (543)
Genus : Escherichia (561)
Species : Escherichia_coli (562)
Strain:

Biosample

Accession: 15904662

GEOGRAPHICAL INFORMATION

Original Query: China,Hangzhou
Original Query Type: name
Address: China,Hangzhou
Coordinates (Lat/Lon): 30.25/120.21

ECOSYSTEM

Original Query: Homo sapiens,throat swab
Classification: host_associated
Host-associated Taxon:
- Homo sapiens (9606)

Visualization

NZ_CP060891.1

Sequence

Accession: NZ_CP060891.1
Description: Escherichia coli strain EC24 plasmid pEC24-7, complete sequence
Source: refseq
Created at NCBI: March 15, 2022

Host Taxonomy

Assigned Host: Escherichia coli (562)

Superkingdom : Bacteria (2)
Phylum : Pseudomonadota (1224)
Class : Gammaproteobacteria (1236)
Order : Enterobacterales (91347)
Family : Enterobacteriaceae (543)
Genus : Escherichia (561)
Species : Escherichia_coli (562)
Strain:

Biosample

Accession: 15904665

GEOGRAPHICAL INFORMATION

Original Query: China,Hangzhou
Original Query Type: name
Address: China,Hangzhou
Coordinates (Lat/Lon): 30.25/120.21

ECOSYSTEM

Original Query: Homo sapiens,urine
Classification: host_associated,urinary_system
Host-associated Taxon:
- Homo sapiens (9606)

Visualization

NZ_CP054194.1

Sequence

Accession: NZ_CP054194.1
Description: Escherichia coli strain TH9F11 plasmid pHNTH9F11-3, complete sequence
Source: refseq
Created at NCBI: Jan. 20, 2022

Host Taxonomy

Assigned Host: Escherichia coli (562)

Superkingdom : Bacteria (2)
Phylum : Pseudomonadota (1224)
Class : Gammaproteobacteria (1236)
Order : Enterobacterales (91347)
Family : Enterobacteriaceae (543)
Genus : Escherichia (561)
Species : Escherichia_coli (562)
Strain:

Biosample

Accession: 15062838

GEOGRAPHICAL INFORMATION

Original Query: China,Guangzhou
Original Query Type: name
Address: China,Guangzhou
Coordinates (Lat/Lon): 23.13/113.26

ECOSYSTEM

Original Query: fish,feces
Classification: fecal,gastrointestinal_system,host_associated
Host-associated Taxon:
- Chordata (7742)

Visualization

Plasmid Visualization

NUCCORE ACC	Source	Element Name	Display	Sequence	Favorite
NUCCORE ACC	Source	Element Name	Display	Sequence	Favorite

Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)

NUCCORE ACC	Gene	Locus Tag	Product	Protein id	Codon Start	Translation Table	GO process
NUCCORE ACC	Gene	Locus Tag	Product	Protein id	Codon Start	Translation Table	GO process

Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)

NUCCORE ACC	Contigs	md5 hash	Replicon Type	Relaxase Type	MPF Type	OriT Type	Predicted Mobility	Primary Cluster ID	Secondary Cluster ID	Observed Host Range Ncbi Rank	Observed Host Range Ncbi Name	Mash Nearest Neighbor	Mash Neighbor Distance	Mash Neighbor Identification	Reported Host Range Lit Rank	Reported Host Range Lit Name	Replicon Type Accession	Relaxase Type Accession	MPF Type Accession	OriT Type Accession	Associated PMID(s)
NUCCORE ACC	Contigs	md5 hash	Replicon Type	Relaxase Type	MPF Type	OriT Type	Predicted Mobility	Primary Cluster ID	Secondary Cluster ID	Observed Host Range Ncbi Rank	Observed Host Range Ncbi Name	Mash Nearest Neighbor	Mash Neighbor Distance	Mash Neighbor Identification	Reported Host Range Lit Rank	Reported Host Range Lit Name	Replicon Type Accession	Relaxase Type Accession	MPF Type Accession	OriT Type Accession	Associated PMID(s)

BLAST results of detected typing markers by MOB-type

NUCCORE ACC	biomarker	MOB-suite ID	Element	Start	End	Strand	Identity	Coverage	Evalue	Bitscore
NUCCORE ACC	biomarker	MOB-suite ID	Element	Start	End	Strand	Identity	Coverage	Evalue	Bitscore