Plasmid NZ_CP083916.1

Sequence

Nucleotide Information

Accession NZ_CP083916.1
Description Enterococcus faecium isolate V1225 plasmid pV1225-4, complete sequence
Source refseq
Topology circular
Length 3200 bp
GC Content 0.34 %
Created at NCBI Sept. 29, 2021



Assembly

Genome Data Information

Accession GCF_020162155.1
Assembly Coverage 154


Biosample

Curated Collection Information
Accession 11021205

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query Denmark
Original Query Type name
Coordinates (Lat/Lon) 56.21/9.30
Address Denmark

ECOSYSTEM
Original Query Homo sapiens,Hospitalized patient
Classification disease,host_associated
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query diseased
DOID/SYMP
  • Disease (DOID:4 )
    • A disease is a disposition (i) to undergo pathological processes that (ii) exists in an organism because of one or more disorders in that organism.

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

NZ_KY595965.1 See Comparison
NZ_CP066395.1 See Comparison
NZ_CP083926.1 See Comparison
NZ_OP378676.1 See Comparison
NZ_KY595965.1 See Comparison
NZ_CP044280.1 See Comparison
NZ_LR135486.1 See Comparison
NZ_LR135441.1 See Comparison
NZ_LR135406.1 See Comparison
NZ_LR135399.1 See Comparison
NZ_LR135417.1 See Comparison
NZ_LR135369.1 See Comparison
NZ_LR135496.1 See Comparison
NZ_CP065761.1 See Comparison
NZ_OU015715.1 See Comparison
NZ_CP018069.1 See Comparison
NZ_LR135392.1 See Comparison
NZ_LR135412.1 See Comparison
NZ_CP066395.1 See Comparison
NZ_CP083926.1 See Comparison
NZ_OP378676.1 See Comparison
NZ_KY595965.1 See Comparison
NZ_CP065761.1 See Comparison
NZ_OU015715.1 See Comparison
NZ_CP018069.1 See Comparison
NZ_LR135486.1 See Comparison
NZ_LR135441.1 See Comparison
NZ_LR135406.1 See Comparison
NZ_LR135399.1 See Comparison
NZ_LR135417.1 See Comparison
NZ_LR135369.1 See Comparison
NZ_LR135496.1 See Comparison
NZ_CP044280.1 See Comparison
NZ_LR135392.1 See Comparison
NZ_LR135412.1 See Comparison
NZ_CP066395.1 See Comparison
NZ_OP378676.1 See Comparison
NZ_CP083926.1 See Comparison
NZ_CP083916.1 See Comparison
NZ_KY595965.1 See Comparison
NZ_CP065761.1 See Comparison
NZ_OU015715.1 See Comparison
NZ_CP044280.1 See Comparison
NZ_CP018069.1 See Comparison
NZ_LR135486.1 See Comparison
NZ_LR135441.1 See Comparison
NZ_LR135406.1 See Comparison
NZ_LR135399.1 See Comparison
NZ_LR135417.1 See Comparison
NZ_LR135369.1 See Comparison
NZ_LR135496.1 See Comparison
NZ_LR135392.1 See Comparison
NZ_LR135412.1 See Comparison
NZ_CP065761.1 See Comparison
NZ_CP066395.1 See Comparison
NZ_CP083926.1 See Comparison
NZ_OP378676.1 See Comparison
NZ_OU015715.1 See Comparison
NZ_CP044280.1 See Comparison
NZ_CP018069.1 See Comparison
NZ_LR135486.1 See Comparison
NZ_LR135441.1 See Comparison
NZ_LR135406.1 See Comparison
NZ_LR135399.1 See Comparison
NZ_LR135417.1 See Comparison
NZ_LR135369.1 See Comparison
NZ_LR135496.1 See Comparison
NZ_LR135392.1 See Comparison
NZ_LR135412.1 See Comparison
NZ_KY595965.1 See Comparison
NZ_CP066395.1 See Comparison
NZ_LR135486.1 See Comparison
NZ_CP018069.1 See Comparison
NZ_OP378676.1 See Comparison
NZ_CP083926.1 See Comparison
NZ_CP065761.1 See Comparison
NZ_OU015715.1 See Comparison
NZ_CP044280.1 See Comparison
NZ_LR135441.1 See Comparison
NZ_LR135406.1 See Comparison
NZ_LR135399.1 See Comparison
NZ_LR135417.1 See Comparison
NZ_LR135369.1 See Comparison
NZ_LR135496.1 See Comparison
NZ_LR135392.1 See Comparison
NZ_LR135412.1 See Comparison
NZ_KY595965.1 See Comparison
NZ_CP044280.1 See Comparison
NZ_CP066395.1 See Comparison
NZ_OP378676.1 See Comparison
NZ_CP083926.1 See Comparison
NZ_CP065761.1 See Comparison
NZ_OU015715.1 See Comparison
NZ_CP018069.1 See Comparison
NZ_LR135486.1 See Comparison
NZ_LR135441.1 See Comparison
NZ_LR135406.1 See Comparison
NZ_LR135399.1 See Comparison
NZ_LR135417.1 See Comparison
NZ_LR135392.1 See Comparison
NZ_LR135369.1 See Comparison
NZ_LR135412.1 See Comparison
NZ_LR135496.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore