Plasmid NZ_CP018069.1

Sequence

Nucleotide Information

Accession NZ_CP018069.1
Description Enterococcus faecium strain E1 plasmid pE1_3, complete sequence
Source refseq
Topology circular
Length 3296 bp
GC Content 0.34 %
Created at NCBI Dec. 3, 2016



Assembly

Genome Data Information

Accession GCF_001886635.1
Assembly Coverage 800


Biosample

Curated Collection Information
Accession 6019998

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query 40.48N;3.69W
Original Query Type coordinates
Coordinates (Lat/Lon) 40.48/-3.69
Address Calle de Pedro Rico, La Paz, Fuencarral-El Pardo, Madrid, Community of Madrid, 28029, Spain

ECOSYSTEM
Original Query Homo sapiens,blood
Classification blood,circulatory_system,host_associated
Host-associated Taxon
  • Homo sapiens (9606)
Host-associated Age 82
Host-associated Sex female

DISEASE
Original Query Bloodstream infection
DOID/SYMP
  • Disease infectious agent (DOID:0050117 )
    • A disease that is the consequence of the presence of pathogenic microbial agents, including pathogenic viruses, pathogenic bacteria, fungi, protozoa, multicellular parasites, and aberrant proteins known as prions.

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

NZ_CP044280.1 See Comparison
NZ_LR135486.1 See Comparison
NZ_LR135441.1 See Comparison
NZ_LR135406.1 See Comparison
NZ_LR135399.1 See Comparison
NZ_LR135417.1 See Comparison
NZ_LR135369.1 See Comparison
NZ_LR135496.1 See Comparison
NZ_LR135392.1 See Comparison
NZ_LR135412.1 See Comparison
NZ_KY595965.1 See Comparison
NZ_CP066395.1 See Comparison
NZ_CP066395.1 See Comparison
NZ_OP378676.1 See Comparison
NZ_CP065761.1 See Comparison
NZ_OU015715.1 See Comparison
NZ_CP044280.1 See Comparison
NZ_LR135486.1 See Comparison
NZ_LR135441.1 See Comparison
NZ_LR135406.1 See Comparison
NZ_LR135399.1 See Comparison
NZ_LR135417.1 See Comparison
NZ_LR135369.1 See Comparison
NZ_LR135496.1 See Comparison
NZ_KY595965.1 See Comparison
NZ_CP083926.1 See Comparison
NZ_CP083916.1 See Comparison
NZ_LR135392.1 See Comparison
NZ_LR135412.1 See Comparison
NZ_OP378676.1 See Comparison
NZ_CP018069.1 See Comparison
NZ_CP083926.1 See Comparison
NZ_CP083916.1 See Comparison
NZ_CP065761.1 See Comparison
NZ_OU015715.1 See Comparison
NZ_CP083926.1 See Comparison
NZ_KY595965.1 See Comparison
NZ_OP378676.1 See Comparison
NZ_CP083926.1 See Comparison
NZ_CP083916.1 See Comparison
NZ_CP044280.1 See Comparison
NZ_LR135486.1 See Comparison
NZ_LR135441.1 See Comparison
NZ_LR135406.1 See Comparison
NZ_LR135399.1 See Comparison
NZ_LR135417.1 See Comparison
NZ_LR135369.1 See Comparison
NZ_LR135496.1 See Comparison
NZ_LR135392.1 See Comparison
NZ_LR135412.1 See Comparison
NZ_CP066395.1 See Comparison
NZ_CP083926.1 See Comparison
NZ_CP083916.1 See Comparison
NZ_CP065761.1 See Comparison
NZ_OU015715.1 See Comparison
NZ_CP044280.1 See Comparison
NZ_LR135486.1 See Comparison
NZ_LR135441.1 See Comparison
NZ_LR135406.1 See Comparison
NZ_LR135399.1 See Comparison
NZ_LR135417.1 See Comparison
NZ_LR135369.1 See Comparison
NZ_LR135496.1 See Comparison
NZ_LR135392.1 See Comparison
NZ_LR135412.1 See Comparison
NZ_KY595965.1 See Comparison
NZ_CP066395.1 See Comparison
NZ_OP378676.1 See Comparison
NZ_CP065761.1 See Comparison
NZ_OU015715.1 See Comparison
NZ_CP044280.1 See Comparison
NZ_LR135486.1 See Comparison
NZ_LR135441.1 See Comparison
NZ_LR135406.1 See Comparison
NZ_LR135399.1 See Comparison
NZ_LR135417.1 See Comparison
NZ_LR135369.1 See Comparison
NZ_LR135496.1 See Comparison
NZ_LR135392.1 See Comparison
NZ_LR135412.1 See Comparison
NZ_KY595965.1 See Comparison
NZ_CP066395.1 See Comparison
NZ_OP378676.1 See Comparison
NZ_CP083916.1 See Comparison
NZ_CP066395.1 See Comparison
NZ_CP065761.1 See Comparison
NZ_OU015715.1 See Comparison
NZ_CP044280.1 See Comparison
NZ_LR135486.1 See Comparison
NZ_LR135441.1 See Comparison
NZ_LR135406.1 See Comparison
NZ_LR135399.1 See Comparison
NZ_LR135417.1 See Comparison
NZ_LR135369.1 See Comparison
NZ_LR135496.1 See Comparison
NZ_LR135392.1 See Comparison
NZ_LR135412.1 See Comparison
NZ_KY595965.1 See Comparison
NZ_CP065761.1 See Comparison
NZ_OP378676.1 See Comparison
NZ_CP083926.1 See Comparison
NZ_CP083916.1 See Comparison
NZ_OU015715.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore