Plasmid NZ_CP082994.1

Sequence

Nucleotide Information

Accession NZ_CP082994.1
Description Klebsiella pneumoniae strain 7008.20 plasmid p6-7008.20, complete sequence
Source refseq
Topology circular
Length 4167 bp
GC Content 0.41 %
Created at NCBI Dec. 11, 2021



Assembly

Genome Data Information

Accession GCF_021137675.1
Assembly Coverage 331.063


Biosample

Curated Collection Information

Accession 21016532

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query 46.947928N;7.422277E
Original Query Type coordinates
Coordinates (Lat/Lon) 46.95/7.42
Address Inselspital, 18, Freiburgstrasse, Holligen, Stadtteil III, Bern, Bern-Mittelland administrative district, Bernese Mittelland administrative region, Bern, 3010, Switzerland

ECOSYSTEM
Original Query Homo sapiens,rectal swab
Classification gastrointestinal_system,host_associated,rectal
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query None/screening
DOID/SYMP

Visualization




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OW967999.1 See Comparison
OW848968.1 See Comparison
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OW849411.1 See Comparison
OW849248.1 See Comparison
OW849151.1 See Comparison
OW849348.1 See Comparison
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OW849319.1 See Comparison
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OW849008.1 See Comparison
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NZ_CP091589.1 See Comparison
NZ_CP083079.1 See Comparison
NZ_CP089004.1 See Comparison
NZ_CP083074.1 See Comparison
NZ_CP074091.1 See Comparison
NZ_CP084396.1 See Comparison
NZ_CP076014.1 See Comparison
NZ_CP126062.1 See Comparison
NZ_CP024435.1 See Comparison
NZ_CP138814.1 See Comparison
NZ_CP138709.1 See Comparison
NZ_CP138687.1 See Comparison
NZ_CP138473.1 See Comparison
NZ_CP137416.1 See Comparison
NZ_CP135486.1 See Comparison
NZ_CP095562.1 See Comparison
NC_011640.1 See Comparison
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NZ_CP137384.1 See Comparison
NZ_CP137432.1 See Comparison
NZ_CP137430.1 See Comparison
NZ_CP137361.1 See Comparison
NZ_CP137412.1 See Comparison
NZ_CP137405.1 See Comparison
NZ_CP137395.1 See Comparison
NZ_CP137368.1 See Comparison
NZ_CP137421.1 See Comparison
NZ_CP137369.1 See Comparison
NZ_CP137354.1 See Comparison
NZ_CP098432.1 See Comparison
NZ_CP134006.1 See Comparison
NZ_CP101122.1 See Comparison
NZ_CP125150.1 See Comparison
CP156947.1 See Comparison
NZ_CP136458.1 See Comparison
NZ_CP125173.1 See Comparison
NZ_CP125105.1 See Comparison
NZ_CP059307.1 See Comparison
NZ_CP140514.1 See Comparison
NZ_CP059313.1 See Comparison
CP052290.1 See Comparison
CP052300.1 See Comparison
CP052274.1 See Comparison
CP052216.1 See Comparison
CP052542.1 See Comparison
CP052308.1 See Comparison
CP052371.1 See Comparison
NZ_CP069824.1 See Comparison
NZ_CP069949.1 See Comparison


Plasmid Visualization


NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)

NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Typing


based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore