Plasmid NZ_CP082991.1

Sequence

Nucleotide Information

Accession NZ_CP082991.1
Description Klebsiella pneumoniae strain 7008.20 plasmid p3-7008.20, complete sequence
Source refseq
Topology circular
Length 112868 bp
GC Content 0.49 %
Created at NCBI Dec. 11, 2021



Assembly

Genome Data Information

Accession GCF_021137675.1
Assembly Coverage 331.063


Biosample

Curated Collection Information
Accession 21016532

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query 46.947928N;7.422277E
Original Query Type coordinates
Coordinates (Lat/Lon) 46.95/7.42
Address Inselspital, 18, Freiburgstrasse, Holligen, Stadtteil III, Bern, Bern-Mittelland administrative district, Bernese Mittelland administrative region, Bern, 3010, Switzerland

ECOSYSTEM
Original Query Homo sapiens,rectal swab
Classification gastrointestinal_system,host_associated,rectal
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query None/screening
DOID/SYMP

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

NZ_CP117747.1 See Comparison
NZ_CP117742.1 See Comparison
NZ_CP084394.1 See Comparison
NZ_CP070892.1 See Comparison
NZ_CP071029.1 See Comparison
NZ_CP082991.1 See Comparison
NZ_CP074089.1 See Comparison
NZ_CP021945.1 See Comparison
NZ_CP021940.1 See Comparison
NZ_CP070892.1 See Comparison
NZ_CP040729.1 See Comparison
NZ_CP138474.1 See Comparison
NZ_CP137413.1 See Comparison
NZ_CP137389.1 See Comparison
NZ_CP137380.1 See Comparison
NZ_CP137433.1 See Comparison
NZ_CP137428.1 See Comparison
NZ_CP137358.1 See Comparison
NZ_CP137394.1 See Comparison
NZ_CP137364.1 See Comparison
NZ_CP137371.1 See Comparison
NZ_CP098428.1 See Comparison
NZ_CP140512.1 See Comparison
CP156946.1 See Comparison
NZ_CP125101.1 See Comparison
NZ_CP117747.1 See Comparison
NZ_CP117742.1 See Comparison
NZ_CP071029.1 See Comparison
NZ_CP074089.1 See Comparison
NZ_CP084394.1 See Comparison
NZ_CP021945.1 See Comparison
NZ_CP021940.1 See Comparison
NZ_CP098428.1 See Comparison
NZ_CP040729.1 See Comparison
NZ_CP138474.1 See Comparison
NZ_CP137413.1 See Comparison
NZ_CP137389.1 See Comparison
NZ_CP137380.1 See Comparison
NZ_CP137433.1 See Comparison
NZ_CP137428.1 See Comparison
NZ_CP137358.1 See Comparison
NZ_CP137394.1 See Comparison
NZ_CP137364.1 See Comparison
NZ_CP137371.1 See Comparison
NZ_CP125101.1 See Comparison
NZ_CP084394.1 See Comparison
CP156946.1 See Comparison
NZ_CP140512.1 See Comparison
NZ_CP117747.1 See Comparison
NZ_CP117742.1 See Comparison
NZ_CP070892.1 See Comparison
NZ_CP071029.1 See Comparison
NZ_CP137389.1 See Comparison
NZ_CP138474.1 See Comparison
NZ_CP074089.1 See Comparison
NZ_CP021945.1 See Comparison
NZ_CP021940.1 See Comparison
NZ_CP040729.1 See Comparison
NZ_CP137380.1 See Comparison
NZ_CP137433.1 See Comparison
NZ_CP137428.1 See Comparison
NZ_CP137358.1 See Comparison
NZ_CP137413.1 See Comparison
NZ_CP137394.1 See Comparison
NZ_CP137364.1 See Comparison
NZ_CP137371.1 See Comparison
NZ_CP098428.1 See Comparison
CP156946.1 See Comparison
NZ_CP125101.1 See Comparison
NZ_CP074089.1 See Comparison
NZ_CP140512.1 See Comparison
NZ_CP117747.1 See Comparison
NZ_CP117742.1 See Comparison
NZ_CP070892.1 See Comparison
NZ_CP071029.1 See Comparison
NZ_CP084394.1 See Comparison
NZ_CP140512.1 See Comparison
NZ_CP137380.1 See Comparison
NZ_CP137433.1 See Comparison
NZ_CP137428.1 See Comparison
NZ_CP137358.1 See Comparison
NZ_CP137394.1 See Comparison
NZ_CP137364.1 See Comparison
NZ_CP137371.1 See Comparison
NZ_CP098428.1 See Comparison
CP156946.1 See Comparison
NZ_CP021945.1 See Comparison
NZ_CP021940.1 See Comparison
NZ_CP040729.1 See Comparison
NZ_CP138474.1 See Comparison
NZ_CP137413.1 See Comparison
NZ_CP137389.1 See Comparison
NZ_CP125101.1 See Comparison
NZ_CP074089.1 See Comparison
NZ_CP117747.1 See Comparison
NZ_CP117742.1 See Comparison
NZ_CP070892.1 See Comparison
NZ_CP071029.1 See Comparison
NZ_CP084394.1 See Comparison
NZ_CP137413.1 See Comparison
NZ_CP040729.1 See Comparison
NZ_CP021945.1 See Comparison
NZ_CP021940.1 See Comparison
NZ_CP138474.1 See Comparison
NZ_CP137428.1 See Comparison
NZ_CP137358.1 See Comparison
NZ_CP137394.1 See Comparison
NZ_CP137364.1 See Comparison
NZ_CP137371.1 See Comparison
NZ_CP137389.1 See Comparison
NZ_CP137380.1 See Comparison
NZ_CP137433.1 See Comparison
NZ_CP098428.1 See Comparison
NZ_CP125101.1 See Comparison
CP156946.1 See Comparison
NZ_CP084394.1 See Comparison
NZ_CP117747.1 See Comparison
NZ_CP117742.1 See Comparison
NZ_CP070892.1 See Comparison
NZ_CP071029.1 See Comparison
NZ_CP140512.1 See Comparison
NZ_CP137389.1 See Comparison
NZ_CP021945.1 See Comparison
NZ_CP021940.1 See Comparison
NZ_CP074089.1 See Comparison
NZ_CP040729.1 See Comparison
NZ_CP138474.1 See Comparison
NZ_CP137380.1 See Comparison
NZ_CP137433.1 See Comparison
NZ_CP137428.1 See Comparison
NZ_CP137358.1 See Comparison
NZ_CP137394.1 See Comparison
NZ_CP137364.1 See Comparison
NZ_CP137371.1 See Comparison
NZ_CP098428.1 See Comparison
NZ_CP137413.1 See Comparison
CP156946.1 See Comparison
NZ_CP125101.1 See Comparison
NZ_CP140512.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore