Plasmid NZ_CP053040.1

Sequence

Nucleotide Information

Accession NZ_CP053040.1
Description Klebsiella pneumoniae strain P35 plasmid pP35E, complete sequence
Source refseq
Topology circular
Length 4167 bp
GC Content 0.41 %
Created at NCBI Sept. 14, 2020



Assembly

Genome Data Information

Accession GCF_014524525.1
Assembly Coverage 120


Biosample

Curated Collection Information
Accession 14770898

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query 23.597500S;46.643600W
Original Query Type coordinates
Coordinates (Lat/Lon) -23.60/-46.64
Address Hospital São Paulo, 715, Rua Napoleão de Barros, Vila Clementino, Vila Mariana, São Paulo, Região Imediata de São Paulo, Região Metropolitana de São Paulo, Região Geográfica Intermediária de São Paulo, São Paulo, Southeast Region, 04024-002, Brazil

ECOSYSTEM
Original Query Homo sapiens,blood
Classification blood,circulatory_system,host_associated
Host-associated Taxon
  • Homo sapiens (9606)
Host-associated Sex male

DISEASE
Original Query Bloodstream infection
DOID/SYMP
  • Disease infectious agent (DOID:0050117 )
    • A disease that is the consequence of the presence of pathogenic microbial agents, including pathogenic viruses, pathogenic bacteria, fungi, protozoa, multicellular parasites, and aberrant proteins known as prions.

Visualization

PNG JSON

Plasmids from same Biosample



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NZ_CP137369.1 See Comparison
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NZ_CP098432.1 See Comparison
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Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore